darkred

Trait PCC P value
Leaf 0.6 0.0⋅10+0
Rosette leaf 0.15 6.0⋅10-19
Rosette 0.12 7.0⋅10-13
Aerial tissue -0.061 3.0⋅10-4
Inflorescence -0.079 3.0⋅10-6
Pollen -0.08 2.0⋅10-6
Flower bud -0.083 9.0⋅10-7
Shoot apex -0.086 3.0⋅10-7
Root tip -0.091 7.0⋅10-8
Flower -0.11 5.0⋅10-10
Cell culture -0.12 1.0⋅10-12
Seed -0.17 3.0⋅10-24
Seedling -0.24 7.0⋅10-48
Root -0.27 9.0⋅10-60

Module Enrichments

Gene Ontology: Biological Process
Rank Pvalue Hits Over-representation Accession Biological Process
1 7.2⋅10-33 64/1159 (5.5%) 6 GO:0006952 defense response
2 1.6⋅10-27 52/873 (6.0%) 6.5 GO:0043207 response to external biotic stimulus
3 1.6⋅10-27 52/873 (6.0%) 6.5 GO:0051707 response to other organism
4 1.6⋅10-27 53/912 (5.8%) 6.3 GO:0009607 response to biotic stimulus
5 2.2⋅10-24 43/634 (6.8%) 7.4 GO:0098542 defense response to other organism
6 1.9⋅10-22 54/1229 (4.4%) 4.8 GO:0051704 multi-organism process
7 1.3⋅10-21 52/1177 (4.4%) 4.8 GO:0009605 response to external stimulus
8 2.3⋅10-21 33/388 (8.5%) 9.3 GO:0009617 response to bacterium
9 6.7⋅10-20 75/2826 (2.7%) 2.9 GO:0006950 response to stress
10 2.0⋅10-18 98/5155 (1.9%) 2.1 GO:0050896 response to stimulus
11 2.2⋅10-16 26/313 (8.3%) 9.1 GO:0042742 defense response to bacterium
12 5.6⋅10-15 24/292 (8.2%) 9 GO:0045087 innate immune response
13 6.6⋅10-15 19/156 (12.2%) 13.3 GO:0009814 defense response, incompatible interaction
14 8.9⋅10-15 24/300 (8.0%) 8.7 GO:0006955 immune response
15 1.2⋅10-14 20/187 (10.7%) 11.7 GO:0009751 response to salicylic acid
16 8.8⋅10-14 24/334 (7.2%) 7.8 GO:0002376 immune system process
17 5.6⋅10-13 23/328 (7.0%) 7.7 GO:0014070 response to organic cyclic compound
18 7.0⋅10-12 12/62 (19.4%) 21.1 GO:0009627 systemic acquired resistance
19 8.5⋅10-10 40/1420 (2.8%) 3.1 GO:0016310 phosphorylation
20 2.3⋅10-9 33/1026 (3.2%) 3.5 GO:0001101 response to acid chemical
21 1.1⋅10-8 37/1346 (2.7%) 3 GO:1901700 response to oxygen-containing compound
22 9.7⋅10-8 30/1002 (3.0%) 3.3 GO:0006468 protein phosphorylation
23 3.0⋅10-7 40/1741 (2.3%) 2.5 GO:0010033 response to organic substance
24 8.7⋅10-7 38/1663 (2.3%) 2.5 GO:0007165 signal transduction
25 9.8⋅10-7 38/1673 (2.3%) 2.5 GO:0023052 signaling
26 2.4⋅10-6 41/1962 (2.1%) 2.3 GO:0006796 phosphate-containing compound metabolic process
27 2.7⋅10-6 41/1974 (2.1%) 2.3 GO:0006793 phosphorus metabolic process
28 3.1⋅10-6 12/194 (6.2%) 6.7 GO:0031347 regulation of defense response
29 3.6⋅10-6 39/1845 (2.1%) 2.3 GO:0007154 cell communication
30 5.2⋅10-6 7/51 (13.7%) 15 GO:0071446 cellular response to salicylic acid stimulus
31 6.9⋅10-6 14/295 (4.7%) 5.2 GO:0009620 response to fungus
32 1.5⋅10-5 11/187 (5.9%) 6.4 GO:0007166 cell surface receptor signaling pathway
33 3.6⋅10-5 12/248 (4.8%) 5.3 GO:0080134 regulation of response to stress
34 4.4⋅10-5 6/46 (13.0%) 14.2 GO:0009863 salicylic acid mediated signaling pathway
35 5.2⋅10-5 4/13 (30.8%) 33.6 GO:0007215 glutamate receptor signaling pathway
36 5.2⋅10-5 4/13 (30.8%) 33.6 GO:0035235 ionotropic glutamate receptor signaling pathway
37 7.0⋅10-5 10/181 (5.5%) 6 GO:0008219 cell death
38 1.1⋅10-4 5/32 (15.6%) 17 GO:0055074 calcium ion homeostasis
39 1.1⋅10-4 42/2389 (1.8%) 1.9 GO:0051716 cellular response to stimulus
40 4.5⋅10-4 4/22 (18.2%) 19.8 GO:0002237 response to molecule of bacterial origin
41 4.7⋅10-4 42/2538 (1.7%) 1.8 GO:0042221 response to chemical
42 4.8⋅10-4 15/497 (3.0%) 3.3 GO:0048583 regulation of response to stimulus
43 5.8⋅10-4 10/235 (4.3%) 4.6 GO:0050832 defense response to fungus
44 8.0⋅10-4 8/154 (5.2%) 5.7 GO:0071407 cellular response to organic cyclic compound
45 8.3⋅10-4 5/50 (10.0%) 10.9 GO:0072507 divalent inorganic cation homeostasis
46 1.2⋅10-3 4/29 (13.8%) 15 GO:0009682 induced systemic resistance
47 1.2⋅10-3 4/29 (13.8%) 15 GO:0006874 cellular calcium ion homeostasis
48 1.4⋅10-3 8/169 (4.7%) 5.2 GO:0048584 positive regulation of response to stimulus
49 1.7⋅10-3 7/131 (5.3%) 5.8 GO:0055065 metal ion homeostasis
50 1.9⋅10-3 6/95 (6.3%) 6.9 GO:0010150 leaf senescence
51 2.0⋅10-3 3/14 (21.4%) 23.4 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
52 2.2⋅10-3 7/138 (5.1%) 5.5 GO:0012501 programmed cell death
53 2.3⋅10-3 6/99 (6.1%) 6.6 GO:0010260 animal organ senescence
54 3.7⋅10-3 5/71 (7.0%) 7.7 GO:0031349 positive regulation of defense response
55 3.9⋅10-3 7/153 (4.6%) 5 GO:0007568 aging
56 4.2⋅10-3 4/42 (9.5%) 10.4 GO:0072503 cellular divalent inorganic cation homeostasis
57 6.7⋅10-3 5/82 (6.1%) 6.7 GO:0045088 regulation of innate immune response
58 7.7⋅10-3 5/85 (5.9%) 6.4 GO:0050776 regulation of immune response
59 8.5⋅10-3 11/404 (2.7%) 3 GO:0071229 cellular response to acid chemical
60 8.6⋅10-3 7/178 (3.9%) 4.3 GO:0055080 cation homeostasis
61 1.0⋅10-2 3/25 (12.0%) 13.1 GO:0009696 salicylic acid metabolic process
62 1.1⋅10-2 5/93 (5.4%) 5.9 GO:0002682 regulation of immune system process
63 1.1⋅10-2 5/93 (5.4%) 5.9 GO:0006875 cellular metal ion homeostasis
64 1.3⋅10-2 7/193 (3.6%) 4 GO:0098771 inorganic ion homeostasis
65 1.5⋅10-2 6/148 (4.1%) 4.4 GO:0010243 response to organonitrogen compound
66 1.6⋅10-2 3/30 (10.0%) 10.9 GO:0016998 cell wall macromolecule catabolic process
67 1.8⋅10-2 7/206 (3.4%) 3.7 GO:0050801 ion homeostasis
68 2.1⋅10-2 12/533 (2.3%) 2.5 GO:1901701 cellular response to oxygen-containing compound
69 2.1⋅10-2 2/10 (20.0%) 21.8 GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
70 2.3⋅10-2 32/2183 (1.5%) 1.6 GO:0006464 cellular protein modification process
71 2.3⋅10-2 32/2183 (1.5%) 1.6 GO:0036211 protein modification process
72 2.4⋅10-2 2/11 (18.2%) 19.8 GO:0010204 defense response signaling pathway, resistance gene-independent
73 2.4⋅10-2 2/11 (18.2%) 19.8 GO:0009697 salicylic acid biosynthetic process
74 2.4⋅10-2 2/11 (18.2%) 19.8 GO:1900056 negative regulation of leaf senescence
75 2.4⋅10-2 4/72 (5.6%) 6.1 GO:0009626 plant-type hypersensitive response
76 2.4⋅10-2 4/73 (5.5%) 6 GO:0034050 host programmed cell death induced by symbiont
77 2.5⋅10-2 3/37 (8.1%) 8.8 GO:0002218 activation of innate immune response
78 2.5⋅10-2 3/37 (8.1%) 8.8 GO:0002253 activation of immune response
79 2.6⋅10-2 3/38 (7.9%) 8.6 GO:0002229 defense response to oomycetes
80 2.7⋅10-2 4/76 (5.3%) 5.7 GO:0009615 response to virus
81 2.7⋅10-2 5/122 (4.1%) 4.5 GO:0030003 cellular cation homeostasis
82 2.7⋅10-2 6/175 (3.4%) 3.7 GO:0055082 cellular chemical homeostasis
83 2.9⋅10-2 9/361 (2.5%) 2.7 GO:0048513 animal organ development
84 2.9⋅10-2 52/4172 (1.2%) 1.4 GO:0050794 regulation of cellular process
85 3.2⋅10-2 3/42 (7.1%) 7.8 GO:0009817 defense response to fungus, incompatible interaction
86 3.2⋅10-2 3/43 (7.0%) 7.6 GO:0031348 negative regulation of defense response
87 3.2⋅10-2 3/43 (7.0%) 7.6 GO:0002239 response to oomycetes
88 3.2⋅10-2 2/14 (14.3%) 15.6 GO:0010112 regulation of systemic acquired resistance
89 3.2⋅10-2 2/14 (14.3%) 15.6 GO:0000187 activation of MAPK activity
90 3.2⋅10-2 2/14 (14.3%) 15.6 GO:0043406 positive regulation of MAP kinase activity
91 3.4⋅10-2 5/133 (3.8%) 4.1 GO:0006873 cellular ion homeostasis
92 3.6⋅10-2 3/45 (6.7%) 7.3 GO:0000165 MAPK cascade
93 4.0⋅10-2 2/16 (12.5%) 13.6 GO:2000031 regulation of salicylic acid mediated signaling pathway
94 4.0⋅10-2 55/4562 (1.2%) 1.3 GO:0050789 regulation of biological process
95 4.3⋅10-2 2/17 (11.8%) 12.8 GO:0006026 aminoglycan catabolic process
96 4.3⋅10-2 2/17 (11.8%) 12.8 GO:0006030 chitin metabolic process
97 4.3⋅10-2 2/17 (11.8%) 12.8 GO:0006032 chitin catabolic process
98 4.3⋅10-2 2/17 (11.8%) 12.8 GO:0046348 amino sugar catabolic process
99 4.3⋅10-2 2/17 (11.8%) 12.8 GO:1901072 glucosamine-containing compound catabolic process
100 4.5⋅10-2 8/330 (2.4%) 2.6 GO:0048878 chemical homeostasis
101 4.6⋅10-2 3/51 (5.9%) 6.4 GO:0045089 positive regulation of innate immune response

Gene Ontology: Molecular Function
Rank Pvalue Hits Over-representation Accession Molecular Function
1 2.4⋅10-8 38/1371 (2.8%) 3.1 GO:0016301 kinase activity
2 3.2⋅10-8 28/798 (3.5%) 3.9 GO:0004674 protein serine/threonine kinase activity
3 2.3⋅10-7 38/1542 (2.5%) 2.7 GO:0016772 transferase activity, transferring phosphorus-containing groups
4 1.1⋅10-6 28/968 (2.9%) 3.2 GO:0004672 protein kinase activity
5 3.6⋅10-6 29/1100 (2.6%) 2.9 GO:0016773 phosphotransferase activity, alcohol group as acceptor
6 1.8⋅10-5 7/57 (12.3%) 13.5 GO:0004888 transmembrane signaling receptor activity
7 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0004970 ionotropic glutamate receptor activity
8 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0005230 extracellular ligand-gated ion channel activity
9 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0008066 glutamate receptor activity
10 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0022824 transmitter-gated ion channel activity
11 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0022835 transmitter-gated channel activity
12 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0030594 neurotransmitter receptor activity
13 4.7⋅10-5 4/13 (30.8%) 33.9 GO:0042165 neurotransmitter binding
14 6.1⋅10-5 12/269 (4.5%) 4.9 GO:0004871 obsolete signal transducer activity
15 8.7⋅10-5 7/82 (8.5%) 9.4 GO:0038023 signaling receptor activity
16 1.2⋅10-4 4/17 (23.5%) 25.9 GO:0016595 glutamate binding
17 1.4⋅10-4 11/250 (4.4%) 4.8 GO:0030246 carbohydrate binding
18 3.2⋅10-4 4/22 (18.2%) 20 GO:0005217 intracellular ligand-gated ion channel activity
19 4.5⋅10-4 5/47 (10.6%) 11.7 GO:0001871 obsolete pattern binding
20 4.5⋅10-4 5/47 (10.6%) 11.7 GO:0030247 polysaccharide binding
21 9.9⋅10-4 7/126 (5.6%) 6.1 GO:0060089 molecular transducer activity
22 1.2⋅10-3 4/32 (12.5%) 13.8 GO:0015276 ligand-gated ion channel activity
23 1.2⋅10-3 4/32 (12.5%) 13.8 GO:0022834 ligand-gated channel activity
24 5.7⋅10-3 46/3313 (1.4%) 1.5 GO:0016740 transferase activity
25 9.8⋅10-3 3/27 (11.1%) 12.2 GO:0019199 transmembrane receptor protein kinase activity
26 9.8⋅10-3 8/245 (3.3%) 3.6 GO:0005509 calcium ion binding
27 1.4⋅10-2 35/2428 (1.4%) 1.6 GO:0097367 carbohydrate derivative binding
28 1.7⋅10-2 31/2107 (1.5%) 1.6 GO:0030554 adenyl nucleotide binding
29 1.7⋅10-2 31/2104 (1.5%) 1.6 GO:0032559 adenyl ribonucleotide binding
30 1.7⋅10-2 2/10 (20.0%) 22 GO:0004675 transmembrane receptor protein serine/threonine kinase activity
31 1.9⋅10-2 2/11 (18.2%) 20 GO:0004714 transmembrane receptor protein tyrosine kinase activity
32 2.2⋅10-2 2/12 (16.7%) 18.3 GO:0005262 calcium channel activity
33 2.2⋅10-2 2/13 (15.4%) 16.9 GO:0004708 MAP kinase kinase activity
34 2.2⋅10-2 33/2358 (1.4%) 1.5 GO:0001882 nucleoside binding
35 2.2⋅10-2 33/2357 (1.4%) 1.5 GO:0032549 ribonucleoside binding
36 2.2⋅10-2 33/2353 (1.4%) 1.5 GO:0001883 purine nucleoside binding
37 2.2⋅10-2 33/2353 (1.4%) 1.5 GO:0032550 purine ribonucleoside binding
38 2.3⋅10-2 33/2373 (1.4%) 1.5 GO:0017076 purine nucleotide binding
39 2.3⋅10-2 33/2370 (1.4%) 1.5 GO:0032555 purine ribonucleotide binding
40 2.5⋅10-2 4/84 (4.8%) 5.2 GO:0022836 gated channel activity
41 2.6⋅10-2 33/2396 (1.4%) 1.5 GO:0032553 ribonucleotide binding
42 2.9⋅10-2 6/195 (3.1%) 3.4 GO:0043168 anion binding
43 3.3⋅10-2 2/17 (11.8%) 12.9 GO:0008061 chitin binding
44 3.5⋅10-2 4/95 (4.2%) 4.6 GO:0031406 carboxylic acid binding
45 3.5⋅10-2 2/18 (11.1%) 12.2 GO:0004568 chitinase activity
46 3.8⋅10-2 2/19 (10.5%) 11.6 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity
47 4.0⋅10-2 8/345 (2.3%) 2.6 GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
48 4.3⋅10-2 3/57 (5.3%) 5.8 GO:0008422 beta-glucosidase activity
49 4.5⋅10-2 85/7999 (1.1%) 1.2 GO:0003824 catalytic activity
50 4.7⋅10-2 4/109 (3.7%) 4 GO:0005216 ion channel activity
51 4.7⋅10-2 3/60 (5.0%) 5.5 GO:0004712 protein serine/threonine/tyrosine kinase activity
52 4.9⋅10-2 2/23 (8.7%) 9.6 GO:0008810 cellulase activity

Gene Ontology: Cellular Component
Rank Pvalue Hits Over-representation Accession Cellular Component
1 3.7⋅10-8 63/3767 (1.7%) 2.1 GO:0071944 cell periphery
2 3.2⋅10-7 55/3260 (1.7%) 2.1 GO:0005886 plasma membrane
3 8.8⋅10-6 86/7006 (1.2%) 1.5 GO:0016020 membrane
4 6.5⋅10-5 64/4840 (1.3%) 1.7 GO:0044425 membrane part
5 1.4⋅10-4 59/4442 (1.3%) 1.7 GO:0031224 intrinsic component of membrane
6 4.5⋅10-4 33/2023 (1.6%) 2 GO:0005576 extracellular region
7 1.0⋅10-3 54/4245 (1.3%) 1.6 GO:0016021 integral component of membrane
8 9.6⋅10-3 10/398 (2.5%) 3.2 GO:0048046 apoplast
9 1.0⋅10-2 15/814 (1.8%) 2.3 GO:0005911 cell-cell junction
10 1.0⋅10-2 15/814 (1.8%) 2.3 GO:0030054 cell junction
11 1.0⋅10-2 15/812 (1.8%) 2.3 GO:0009506 plasmodesma
12 1.0⋅10-2 15/812 (1.8%) 2.3 GO:0055044 symplast

Plant Ontology: Plant Anatomy
Rank Pvalue Hits Over-representation Accession Plant Anatomy
1 1.7⋅10-11 146/12259 (1.2%) 1.4 PO:0025099 embryo plant structure
2 1.7⋅10-11 146/12250 (1.2%) 1.4 PO:0020030 cotyledon
3 1.7⋅10-11 146/12233 (1.2%) 1.4 PO:0025233 portion of embryo plant tissue
4 1.7⋅10-11 146/12221 (1.2%) 1.4 PO:0000015 cotyledon primordium
5 1.7⋅10-11 146/12221 (1.2%) 1.4 PO:0025432 cotyledon anlagen
6 6.9⋅10-11 149/12918 (1.2%) 1.3 PO:0000013 cauline leaf
7 1.1⋅10-9 161/15575 (1.0%) 1.2 PO:0002000 stomatal complex
8 1.1⋅10-9 161/15574 (1.0%) 1.2 PO:0000062 stomatal initial cell
9 1.1⋅10-9 161/15574 (1.0%) 1.2 PO:0000351 guard mother cell
10 1.1⋅10-9 161/15573 (1.0%) 1.2 PO:0000293 guard cell
11 1.1⋅10-9 158/14901 (1.1%) 1.2 PO:0000017 vascular leaf primordium
12 1.1⋅10-9 158/14900 (1.1%) 1.2 PO:0025431 vascular leaf anlagen
13 1.1⋅10-9 161/15589 (1.0%) 1.2 PO:0025165 shoot epidermal cell
14 1.2⋅10-9 158/14959 (1.1%) 1.2 PO:0009025 vascular leaf
15 1.3⋅10-9 161/15618 (1.0%) 1.2 PO:0006035 shoot system epidermis
16 2.7⋅10-9 161/15708 (1.0%) 1.2 PO:0004013 epidermal cell
17 3.2⋅10-9 161/15745 (1.0%) 1.2 PO:0004011 initial cell
18 3.2⋅10-9 158/15102 (1.0%) 1.2 PO:0025034 leaf
19 3.2⋅10-9 161/15737 (1.0%) 1.2 PO:0000349 epidermal initial cell
20 3.9⋅10-9 161/15771 (1.0%) 1.2 PO:0005679 epidermis
21 2.1⋅10-8 150/13899 (1.1%) 1.3 PO:0004705 stamen primordium
22 2.1⋅10-8 150/13899 (1.1%) 1.3 PO:0025486 stamen anlagen
23 3.6⋅10-8 158/15419 (1.0%) 1.2 PO:0009047 stem
24 3.6⋅10-8 150/13986 (1.1%) 1.2 PO:0009028 microsporophyll
25 3.6⋅10-8 150/13984 (1.1%) 1.2 PO:0009029 stamen
26 3.6⋅10-8 150/13984 (1.1%) 1.2 PO:0009061 androecium
27 4.6⋅10-8 162/16310 (1.0%) 1.2 PO:0004010 meristematic cell
28 7.8⋅10-7 138/12582 (1.1%) 1.3 PO:0008019 leaf lamina base
29 8.8⋅10-7 138/12619 (1.1%) 1.3 PO:0025060 lamina
30 8.8⋅10-7 138/12619 (1.1%) 1.3 PO:0025396 phyllome lamina
31 8.8⋅10-7 138/12619 (1.1%) 1.3 PO:0025513 plant organ lamina
32 8.8⋅10-7 138/12607 (1.1%) 1.3 PO:0020039 leaf lamina
33 7.8⋅10-6 156/15745 (1.0%) 1.2 PO:0025022 collective leaf structure
34 2.5⋅10-5 150/14914 (1.0%) 1.2 PO:0009026 sporophyll
35 2.8⋅10-5 160/16672 (1.0%) 1.1 PO:0025128 phyllome primordium
36 2.8⋅10-5 160/16672 (1.0%) 1.1 PO:0025430 phyllome anlagen
37 4.1⋅10-5 158/16347 (1.0%) 1.1 PO:0025029 shoot axis
38 4.7⋅10-5 160/16747 (1.0%) 1.1 PO:0006001 phyllome
39 2.3⋅10-4 149/15128 (1.0%) 1.1 PO:0025498 cardinal part of multi-tissue plant structure
40 2.3⋅10-4 149/15127 (1.0%) 1.1 PO:0025001 cardinal organ part
41 2.7⋅10-4 158/16625 (1.0%) 1.1 PO:0025023 collective phyllome structure
42 4.1⋅10-4 162/17450 (0.9%) 1.1 PO:0009002 plant cell
43 4.1⋅10-4 162/17450 (0.9%) 1.1 PO:0025606 native plant cell
44 4.8⋅10-4 160/17080 (0.9%) 1.1 PO:0025004 plant axis
45 6.6⋅10-4 131/12807 (1.0%) 1.2 PO:0020137 leaf apex
46 6.6⋅10-4 131/12807 (1.0%) 1.2 PO:0025139 phyllome apex
47 7.6⋅10-4 132/12971 (1.0%) 1.2 PO:0000230 inflorescence meristem
48 2.3⋅10-3 126/12419 (1.0%) 1.2 PO:0020038 petiole
49 2.4⋅10-3 165/18389 (0.9%) 1 PO:0009006 shoot system
50 2.7⋅10-3 126/12463 (1.0%) 1.2 PO:0025066 stalk
51 3.4⋅10-3 153/16238 (0.9%) 1.1 PO:0025395 floral organ
52 4.1⋅10-3 147/15391 (1.0%) 1.1 PO:0004704 sepal primordium
53 4.1⋅10-3 147/15391 (1.0%) 1.1 PO:0025485 sepal anlagen
54 4.2⋅10-3 147/15404 (1.0%) 1.1 PO:0009031 sepal
55 4.2⋅10-3 147/15404 (1.0%) 1.1 PO:0009060 calyx
56 4.4⋅10-3 157/16932 (0.9%) 1.1 PO:0000003 whole plant
57 1.0⋅10-2 154/16616 (0.9%) 1.1 PO:0025477 floral organ primordium
58 1.1⋅10-2 148/15752 (0.9%) 1.1 PO:0009058 perianth
59 1.2⋅10-2 2/13 (15.4%) 17.9 PO:0006503 fruit abscission zone
60 2.7⋅10-2 5/160 (3.1%) 3.6 PO:0003011 root vascular system
61 2.7⋅10-2 160/17741 (0.9%) 1 PO:0025127 primordium
62 3.1⋅10-2 3/59 (5.1%) 5.9 PO:0000146 abscission zone
63 4.0⋅10-2 6/243 (2.5%) 2.9 PO:0020124 root stele
64 4.1⋅10-2 156/17205 (0.9%) 1.1 PO:0009046 flower
65 4.7⋅10-2 165/18756 (0.9%) 1 PO:0009007 portion of plant tissue

Plant Ontology: Plant Structure Development Stage
Rank Pvalue Hits Over-representation Accession Plant Structure Development Stage
1 8.7⋅10-16 150/12130 (1.2%) 1.4 PO:0007095 LP.08 eight leaves visible stage
2 8.7⋅10-16 152/12503 (1.2%) 1.4 PO:0007123 LP.06 six leaves visible stage
3 4.6⋅10-13 156/14029 (1.1%) 1.3 PO:0007112 1 main shoot growth stage
4 4.6⋅10-13 156/14028 (1.1%) 1.3 PO:0007133 leaf production stage
5 1.9⋅10-12 148/12600 (1.2%) 1.3 PO:0007103 LP.10 ten leaves visible stage
6 1.5⋅10-10 151/13626 (1.1%) 1.3 PO:0007115 LP.04 four leaves visible stage
7 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0001050 leaf development stage
8 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0001051 vascular leaf initiation stage
9 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0001052 vascular leaf expansion stage
10 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0025570 vascular leaf development stage
11 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0025574 vascular leaf differentiation stage
12 1.6⋅10-10 146/12844 (1.1%) 1.3 PO:0025579 phyllome development stage
13 1.6⋅10-10 146/12842 (1.1%) 1.3 PO:0001053 vascular leaf post-expansion stage
14 1.6⋅10-10 146/12841 (1.1%) 1.3 PO:0001054 vascular leaf senescent stage
15 1.6⋅10-10 143/12273 (1.2%) 1.3 PO:0007098 LP.02 two leaves visible stage
16 10.0⋅10-10 140/12109 (1.2%) 1.3 PO:0007064 LP.12 twelve leaves visible stage
17 7.6⋅10-6 156/15979 (1.0%) 1.1 PO:0007134 sporophyte vegetative stage
18 7.6⋅10-6 156/15976 (1.0%) 1.1 PO:0001097 plant zygote stage
19 2.2⋅10-4 160/17337 (0.9%) 1.1 PO:0028002 sporophyte development stage
20 4.4⋅10-4 156/16507 (0.9%) 1.1 PO:0025337 life of whole plant stage
21 4.1⋅10-3 152/16154 (0.9%) 1.1 PO:0025588 flower meristem transition stage
22 4.1⋅10-3 152/16153 (0.9%) 1.1 PO:0007616 flowering stage
23 6.5⋅10-3 160/17730 (0.9%) 1 PO:0007033 whole plant development stage

WikiPathways
Rank Pvalue Hits Over-representation WikiPathways Description

KEGG
Rank Pvalue Hits Over-representation Entry Name
1 1.2⋅10-3 7/159 (4.4%) 6.3 ath04626 Plant-pathogen interaction - Arabidopsis thaliana (thale cress)

AraCyc
Rank Pvalue Hits Over-representation PathwayID Pathway Name
1 1.1⋅10-2 3/26 (11.5%) 13.6 CAMALEXIN-SYN camalexin biosynthesis
2 1.5⋅10-2 2/15 (13.3%) 15.7 PWY-6902 chitin degradation II (Vibrio)
3 1.5⋅10-2 2/14 (14.3%) 16.8 PWYQT-4477 indole glucosinolate activation (intact plant cell)
4 1.5⋅10-2 2/12 (16.7%) 19.6 PWY-5152 leucodelphinidin biosynthesis
5 2.6⋅10-2 2/26 (7.7%) 9 PWY-601 glucosinolate biosynthesis from tryptophan
6 2.6⋅10-2 2/25 (8.0%) 9.4 PWY-6787 flavonoid biosynthesis (in equisetum)
7 2.6⋅10-2 2/22 (9.1%) 10.7 PWY-5381 pyridine nucleotide cycling (plants)
8 2.6⋅10-2 2/28 (7.1%) 8.4 PWY1F-FLAVSYN flavonoid biosynthesis
9 4.1⋅10-2 2/38 (5.3%) 6.2 PWY-6351 D-myo-inositol (1,4,5)-trisphosphate biosynthesis

AtRegNet
Rank Pvalue Hits Over-representation TF Symbol TF Name TF Description
1 8.5⋅10-22 105/5410 (1.9%) 2.5 WRKY55 WRKY DNA-binding protein 55 WRKY DNA-binding protein 55
2 6.6⋅10-12 103/7025 (1.5%) 1.9 WRKY28 WRKY DNA-binding protein 28 WRKY DNA-binding protein 28
3 2.5⋅10-11 44/1631 (2.7%) 3.4 AT3G42860 AT3G42860 zinc knuckle (CCHC-type) family protein
4 7.5⋅10-10 121/9854 (1.2%) 1.6 WRKY75 WRKY DNA-binding protein 75 WRKY DNA-binding protein 75
5 8.4⋅10-10 82/5280 (1.6%) 2 WRKY71 WRKY DNA-binding protein 71 WRKY DNA-binding protein 71
6 3.9⋅10-9 60/3285 (1.8%) 2.3 WRKY33 WRKY DNA-binding protein 33 WRKY DNA-binding protein 33
7 1.1⋅10-8 117/9721 (1.2%) 1.5 WRKY18 WRKY DNA-binding protein 18 WRKY DNA-binding protein 18
8 6.2⋅10-8 97/7474 (1.3%) 1.6 WRKY50 WRKY DNA-binding protein 50 WRKY DNA-binding protein 50
9 9.2⋅10-8 39/1764 (2.2%) 2.8 WRKY29 WRKY29 WRKY family transcription factor
10 2.4⋅10-7 77/5416 (1.4%) 1.8 WRKY65 WRKY DNA-binding protein 65 WRKY DNA-binding protein 65
11 2.4⋅10-7 52/2950 (1.8%) 2.2 WRKY14 WRKY DNA-binding protein 14 WRKY DNA-binding protein 14
12 9.4⋅10-7 73/5170 (1.4%) 1.8 NAC050 NAC domain containing protein 50 NAC domain containing protein 50
13 9.7⋅10-7 78/5722 (1.4%) 1.7 WRKY45 WRKY DNA-binding protein 45 WRKY DNA-binding protein 45
14 2.3⋅10-6 60/3954 (1.5%) 1.9 NAC004 NAC domain containing protein 4 NAC domain containing protein 4
15 2.8⋅10-6 24/894 (2.7%) 3.4 WRKY3 WRKY DNA-binding protein 3 WRKY DNA-binding protein 3
16 2.8⋅10-6 56/3596 (1.6%) 2 WRKY25 WRKY DNA-binding protein 25 WRKY DNA-binding protein 25
17 2.8⋅10-6 72/5228 (1.4%) 1.7 NAC2 NAC domain containing protein 2 NAC domain containing protein 2
17 2.8⋅10-6 72/5228 (1.4%) 1.7 NAC2 NAC domain containing protein 2 NAC domain containing protein 2
18 5.0⋅10-6 117/10731 (1.1%) 1.4 WRKY15 WRKY DNA-binding protein 15 WRKY DNA-binding protein 15
19 6.9⋅10-6 63/4417 (1.4%) 1.8 NAC020 NAC domain containing protein 20 NAC domain containing protein 20
20 1.1⋅10-5 64/4583 (1.4%) 1.8 NAC028 NAC domain containing protein 28 NAC domain containing protein 28
21 2.6⋅10-5 80/6464 (1.2%) 1.6 NAC083 NAC domain containing protein 83 NAC domain containing protein 83
22 2.6⋅10-5 50/3285 (1.5%) 1.9 NAC13 NAC domain protein 13 NAC domain protein 13
23 3.6⋅10-5 62/4544 (1.4%) 1.7 WRKY24 WRKY DNA-binding protein 24 WRKY DNA-binding protein 24
24 3.9⋅10-5 34/1863 (1.8%) 2.3 WRKY27 WRKY DNA-binding protein 27 WRKY DNA-binding protein 27
25 4.2⋅10-5 44/2777 (1.6%) 2 NAC057 NAC domain containing protein 57 NAC domain containing protein 57
26 8.2⋅10-5 78/6437 (1.2%) 1.5 NAC045 NAC domain containing protein 45 NAC domain containing protein 45
27 1.8⋅10-4 89/7862 (1.1%) 1.4 NAC016 NAC domain containing protein 16 NAC domain containing protein 16
28 2.2⋅10-4 82/7078 (1.2%) 1.5 NAC058 NAC domain containing protein 58 NAC domain containing protein 58
29 2.4⋅10-4 28/1522 (1.8%) 2.3 WRKY20 WRKY20 WRKY family transcription factor family protein
30 3.8⋅10-4 52/3860 (1.3%) 1.7 CUC3 CUP SHAPED COTYLEDON3 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
31 5.6⋅10-4 77/6675 (1.2%) 1.5 NAC101 NAC-domain protein 101 NAC-domain protein 101
32 7.1⋅10-4 44/3138 (1.4%) 1.8 NAC103 NAC domain containing protein 103 NAC domain containing protein 103
33 9.4⋅10-4 70/5976 (1.2%) 1.5 NTM1 NAC with transmembrane motif1 NAC with transmembrane motif1
34 1.6⋅10-3 85/7834 (1.1%) 1.4 NAC071 NAC domain containing protein 71 NAC domain containing protein 71
35 1.9⋅10-3 42/3081 (1.4%) 1.7 NAC069 NAC domain containing protein 69 NAC domain containing protein 69
36 2.1⋅10-3 15/661 (2.3%) 2.9 AT1G19040 AT1G19040 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
37 2.2⋅10-3 52/4155 (1.3%) 1.6 VND1 vascular related NAC-domain protein 1 vascular related NAC-domain protein 1
38 3.8⋅10-3 30/2007 (1.5%) 1.9 CUC1 CUP-SHAPED COTYLEDON1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
39 4.7⋅10-3 55/4622 (1.2%) 1.5 NAC005 NAC domain containing protein 5 NAC domain containing protein 5
40 4.8⋅10-3 12/500 (2.4%) 3 TGA10 TGACG (TGA) motif-binding protein 10 bZIP transcription factor family protein
41 5.7⋅10-3 69/6250 (1.1%) 1.4 NST1 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
42 7.4⋅10-3 24/1542 (1.6%) 2 ANAC087 Arabidopsis NAC domain containing protein 87 NAC domain containing protein 87
43 7.4⋅10-3 69/6320 (1.1%) 1.4 NAC076 NAC domain containing protein 76 NAC domain containing protein 76
44 7.4⋅10-3 11/458 (2.4%) 3 NAC073 NAC domain containing protein 73 NAC domain containing protein 73
45 9.4⋅10-3 85/8289 (1.0%) 1.3 GOA GORDITA GORDITA
46 1.1⋅10-2 47/3939 (1.2%) 1.5 NAC042 NAC domain containing protein 42 NAC domain containing protein 42
47 1.4⋅10-2 89/8883 (1.0%) 1.3 AT5G60130 AT5G60130 AP2/B3-like transcriptional factor family protein
48 1.4⋅10-2 26/1823 (1.4%) 1.8 NAC6 NAC domain containing protein 6 NAC domain containing protein 6
49 1.6⋅10-2 97/9933 (1.0%) 1.2 HB23 homeobox protein 23 homeobox protein 23
50 1.7⋅10-2 99/10208 (1.0%) 1.2 NAC010 NAC domain containing protein 10 NAC domain containing protein 10
51 1.8⋅10-2 35/2772 (1.3%) 1.6 AT2G20110 AT2G20110 Tesmin/TSO1-like CXC domain-containing protein
52 2.3⋅10-2 82/8185 (1.0%) 1.3 SMB SOMBRERO NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
52 2.3⋅10-2 82/8185 (1.0%) 1.3 smB small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein associated protein B
53 3.4⋅10-2 34/2787 (1.2%) 1.5 NAC075 NAC domain containing protein 75 NAC domain containing protein 75
54 3.4⋅10-2 24/1762 (1.4%) 1.7 OBF5 OCS-element binding factor 5 OCS-element binding factor 5
55 3.4⋅10-2 44/3870 (1.1%) 1.4 AT5G61620 AT5G61620 myb-like transcription factor family protein
56 3.5⋅10-2 78/7830 (1.0%) 1.3 RTV1 related to vernalization1 1 related to vernalization1 1
57 3.9⋅10-2 60/5720 (1.0%) 1.3 ATAF1 ATAF1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
58 3.9⋅10-2 60/5727 (1.0%) 1.3 SVP SHORT VEGETATIVE PHASE K-box region and MADS-box transcription factor family protein
59 4.5⋅10-2 54/5077 (1.1%) 1.3 HAT2 HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
60 4.7⋅10-2 43/3846 (1.1%) 1.4 NAC038 NAC domain containing protein 38 NAC domain containing protein 38

Plant Cistrome Database
Rank Pvalue Hits Over-representation TF Symbol TF Name TF Description
1 9.8⋅10-22 105/5410 (1.9%) 2.5 WRKY55 WRKY DNA-binding protein 55 WRKY DNA-binding protein 55
2 5.5⋅10-17 93/4971 (1.9%) 2.4 WRKY70 WRKY DNA-binding protein 70 WRKY DNA-binding protein 70
3 1.2⋅10-12 81/4556 (1.8%) 2.3 WRKY40 WRKY DNA-binding protein 40 WRKY DNA-binding protein 40
4 3.9⋅10-12 103/7025 (1.5%) 1.9 WRKY28 WRKY DNA-binding protein 28 WRKY DNA-binding protein 28
5 1.9⋅10-11 44/1631 (2.7%) 3.4 AT3G42860 AT3G42860 zinc knuckle (CCHC-type) family protein
6 8.4⋅10-10 82/5280 (1.6%) 2 WRKY71 WRKY DNA-binding protein 71 WRKY DNA-binding protein 71
7 2.7⋅10-9 123/10347 (1.2%) 1.5 WRKY18 WRKY DNA-binding protein 18 WRKY DNA-binding protein 18
8 2.7⋅10-9 123/10333 (1.2%) 1.5 WRKY75 WRKY DNA-binding protein 75 WRKY DNA-binding protein 75
9 3.2⋅10-9 60/3284 (1.8%) 2.3 WRKY33 WRKY DNA-binding protein 33 WRKY DNA-binding protein 33
10 5.9⋅10-8 97/7474 (1.3%) 1.6 WRKY50 WRKY DNA-binding protein 50 WRKY DNA-binding protein 50
11 1.1⋅10-7 114/9677 (1.2%) 1.5 WRKY27 WRKY DNA-binding protein 27 WRKY DNA-binding protein 27
12 1.2⋅10-7 51/2793 (1.8%) 2.3 WRKY30 WRKY DNA-binding protein 30 WRKY DNA-binding protein 30
13 1.7⋅10-7 117/10157 (1.2%) 1.5 WRKY8 WRKY DNA-binding protein 8 WRKY DNA-binding protein 8
14 3.3⋅10-7 44/2274 (1.9%) 2.5 WRKY31 WRKY DNA-binding protein 31 WRKY DNA-binding protein 31
15 8.7⋅10-7 55/3354 (1.6%) 2.1 WRKY6 WRKY6 WRKY family transcription factor
16 1.3⋅10-6 79/5873 (1.3%) 1.7 NAC050 NAC domain containing protein 50 NAC domain containing protein 50
17 1.8⋅10-6 78/5808 (1.3%) 1.7 WRKY45 WRKY DNA-binding protein 45 WRKY DNA-binding protein 45
18 3.3⋅10-6 24/894 (2.7%) 3.4 WRKY3 WRKY DNA-binding protein 3 WRKY DNA-binding protein 3
19 3.4⋅10-6 52/3225 (1.6%) 2 NAC057 NAC domain containing protein 57 NAC domain containing protein 57
20 5.7⋅10-6 78/5982 (1.3%) 1.7 NAC096 NAC domain containing protein 96 NAC domain containing protein 96
21 7.5⋅10-6 117/10809 (1.1%) 1.4 WRKY15 WRKY DNA-binding protein 15 WRKY DNA-binding protein 15
22 7.5⋅10-6 100/8617 (1.2%) 1.5 WRKY29 WRKY29 WRKY family transcription factor
23 7.5⋅10-6 63/4417 (1.4%) 1.8 NAC020 NAC domain containing protein 20 NAC domain containing protein 20
24 7.8⋅10-6 60/4128 (1.5%) 1.8 NAC053 NAC domain containing protein 53 NAC domain containing protein 53
25 9.9⋅10-6 89/7363 (1.2%) 1.5 WRKY65 WRKY DNA-binding protein 65 WRKY DNA-binding protein 65
26 9.9⋅10-6 64/4583 (1.4%) 1.8 NAC028 NAC domain containing protein 28 NAC domain containing protein 28
27 9.9⋅10-6 70/5212 (1.3%) 1.7 WRKY14 WRKY DNA-binding protein 14 WRKY DNA-binding protein 14
28 1.3⋅10-5 117/10931 (1.1%) 1.4 WRKY22 WRKY22 WRKY family transcription factor
29 2.4⋅10-5 50/3285 (1.5%) 1.9 NAC13 NAC domain protein 13 NAC domain protein 13
30 2.7⋅10-5 81/6598 (1.2%) 1.6 NAC045 NAC domain containing protein 45 NAC domain containing protein 45
31 5.9⋅10-5 92/8026 (1.1%) 1.5 WRKY25 WRKY DNA-binding protein 25 WRKY DNA-binding protein 25
32 6.9⋅10-5 85/7222 (1.2%) 1.5 WRKY24 WRKY DNA-binding protein 24 WRKY DNA-binding protein 24
33 1.0⋅10-4 82/6943 (1.2%) 1.5 NAC2 NAC domain containing protein 2 NAC domain containing protein 2
33 1.0⋅10-4 82/6943 (1.2%) 1.5 NAC2 NAC domain containing protein 2 NAC domain containing protein 2
34 1.1⋅10-4 66/5147 (1.3%) 1.6 NAC004 NAC domain containing protein 4 NAC domain containing protein 4
35 1.1⋅10-4 61/4618 (1.3%) 1.7 NAC6 NAC domain containing protein 6 NAC domain containing protein 6
36 1.6⋅10-4 89/7862 (1.1%) 1.4 NAC016 NAC domain containing protein 16 NAC domain containing protein 16
37 1.7⋅10-4 22/1014 (2.2%) 2.7 WRKY21 WRKY DNA-binding protein 21 WRKY DNA-binding protein 21
38 2.3⋅10-4 28/1521 (1.8%) 2.3 WRKY20 WRKY20 WRKY family transcription factor family protein
39 2.4⋅10-4 72/5963 (1.2%) 1.5 NAC007 NAC 007 NAC 007
40 2.5⋅10-4 81/7005 (1.2%) 1.5 NAC083 NAC domain containing protein 83 NAC domain containing protein 83
41 3.0⋅10-4 52/3837 (1.4%) 1.7 LOV1 LOCUS ORCHESTRATING VICTORIN EFFECTS1 NB-ARC domain-containing disease resistance protein
41 3.0⋅10-4 52/3837 (1.4%) 1.7 LOV1 LONG VEGETATIVE PHASE 1 NAC domain containing protein 35
42 3.4⋅10-4 52/3860 (1.3%) 1.7 CUC3 CUP SHAPED COTYLEDON3 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
43 5.3⋅10-4 77/6686 (1.2%) 1.5 NAC101 NAC-domain protein 101 NAC-domain protein 101
44 5.4⋅10-4 90/8242 (1.1%) 1.4 NAC071 NAC domain containing protein 71 NAC domain containing protein 71
45 8.0⋅10-4 82/7359 (1.1%) 1.4 NAC058 NAC domain containing protein 58 NAC domain containing protein 58
46 8.5⋅10-4 44/3181 (1.4%) 1.8 NAC103 NAC domain containing protein 103 NAC domain containing protein 103
47 1.7⋅10-3 42/3081 (1.4%) 1.7 NAC069 NAC domain containing protein 69 NAC domain containing protein 69
48 2.0⋅10-3 15/661 (2.3%) 2.9 AT1G19040 AT1G19040 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
49 2.1⋅10-3 52/4155 (1.3%) 1.6 VND1 vascular related NAC-domain protein 1 vascular related NAC-domain protein 1
50 2.6⋅10-3 23/1334 (1.7%) 2.2 WRKY7 WRKY DNA-binding protein 7 WRKY DNA-binding protein 7
51 2.8⋅10-3 82/7634 (1.1%) 1.4 NAC070 NAC domain containing protein 70 NAC domain containing protein 70
52 3.3⋅10-3 85/8038 (1.1%) 1.3 NTM1 NAC with transmembrane motif1 NAC with transmembrane motif1
53 3.4⋅10-3 30/2007 (1.5%) 1.9 CUC1 CUP-SHAPED COTYLEDON1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
54 4.3⋅10-3 55/4622 (1.2%) 1.5 NAC005 NAC domain containing protein 5 NAC domain containing protein 5
55 5.6⋅10-3 102/10291 (1.0%) 1.3 HB25 homeobox protein 25 homeobox protein 25
56 5.8⋅10-3 34/2472 (1.4%) 1.7 CUC2 CUP-SHAPED COTYLEDON 2 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
57 6.9⋅10-3 33/2399 (1.4%) 1.7 NAC105 NAC domain containing protein 105 NAC domain containing protein 105
58 9.0⋅10-3 85/8289 (1.0%) 1.3 GOA GORDITA GORDITA
59 1.1⋅10-2 47/3936 (1.2%) 1.5 NAC042 NAC domain containing protein 42 NAC domain containing protein 42
60 1.1⋅10-2 101/10337 (1.0%) 1.2 HB23 homeobox protein 23 homeobox protein 23
61 1.3⋅10-2 89/8883 (1.0%) 1.3 AT5G60130 AT5G60130 AP2/B3-like transcriptional factor family protein
62 1.3⋅10-2 27/1904 (1.4%) 1.8 NAC080 NAC domain containing protein 80 NAC domain containing protein 80
63 1.3⋅10-2 42/3444 (1.2%) 1.5 ANAC087 Arabidopsis NAC domain containing protein 87 NAC domain containing protein 87
64 1.3⋅10-2 85/8410 (1.0%) 1.3 HB32 homeobox protein 32 homeobox protein 32
65 1.6⋅10-2 100/10334 (1.0%) 1.2 HB51 homeobox 51 homeobox 51
66 1.9⋅10-2 60/5534 (1.1%) 1.4 HAT2 HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
67 2.0⋅10-2 74/7195 (1.0%) 1.3 NAC046 NAC domain containing protein 46 NAC domain containing protein 46
68 2.3⋅10-2 76/7465 (1.0%) 1.3 NAC076 NAC domain containing protein 76 NAC domain containing protein 76
69 2.4⋅10-2 61/5717 (1.1%) 1.4 HDG1 homeodomain GLABROUS 1 homeodomain GLABROUS 1
70 2.4⋅10-2 30/2315 (1.3%) 1.6 TGA3 TGA1A-related gene 3 transcription factor TGA3
71 2.4⋅10-2 76/7487 (1.0%) 1.3 NST1 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
72 2.4⋅10-2 53/4793 (1.1%) 1.4 NAC3 NAC domain containing protein 3 NAC domain containing protein 3
72 2.4⋅10-2 53/4793 (1.1%) 1.4 NAC3 NAC domain containing protein 3 NAC domain containing protein 3
73 2.8⋅10-2 98/10271 (1.0%) 1.2 AT5G56840 AT5G56840 myb-like transcription factor family protein
74 3.0⋅10-2 65/6250 (1.0%) 1.3 AT5G47660 AT5G47660 Homeodomain-like superfamily protein
75 3.0⋅10-2 24/1760 (1.4%) 1.7 OBF5 OCS-element binding factor 5 OCS-element binding factor 5
76 3.0⋅10-2 34/2785 (1.2%) 1.5 NAC075 NAC domain containing protein 75 NAC domain containing protein 75
77 3.3⋅10-2 105/11231 (0.9%) 1.2 smB small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein associated protein B
77 3.3⋅10-2 105/11231 (0.9%) 1.2 SMB SOMBRERO NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
78 3.4⋅10-2 98/10344 (0.9%) 1.2 RTV1 related to vernalization1 1 related to vernalization1 1
79 3.5⋅10-2 60/5720 (1.0%) 1.3 ATAF1 ATAF1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
80 3.9⋅10-2 85/8763 (1.0%) 1.2 SGR5 SHOOT GRAVITROPISM 5 C2H2-like zinc finger protein
81 4.2⋅10-2 57/5425 (1.1%) 1.3 MYB116 myb domain protein 116 myb domain protein 116
82 4.3⋅10-2 88/9165 (1.0%) 1.2 AT2G20110 AT2G20110 Tesmin/TSO1-like CXC domain-containing protein
83 4.3⋅10-2 43/3846 (1.1%) 1.4 NAC038 NAC domain containing protein 38 NAC domain containing protein 38

Pfam
Rank Pvalue Hits Over-representation Family Summary
1 3.7⋅10-8 9/55 (16.4%) 18.7 Stress-antifung Salt stress response/antifungal
2 2.3⋅10-6 10/124 (8.1%) 9.2 LRR_1 Leucine Rich Repeat
3 7.0⋅10-5 4/17 (23.5%) 26.8 Lig_chan Ligand-gated ion channel
4 7.0⋅10-5 4/17 (23.5%) 26.8 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
5 7.0⋅10-5 4/17 (23.5%) 26.8 ANF_receptor Receptor family ligand binding region
6 7.0⋅10-5 13/340 (3.8%) 4.4 Pkinase_Tyr Protein tyrosine kinase
7 2.7⋅10-4 10/242 (4.1%) 4.7 LRR_8 Leucine rich repeat
8 7.4⋅10-4 15/579 (2.6%) 3 Pkinase Protein kinase domain
9 8.5⋅10-4 5/63 (7.9%) 9.1 WRKY WRKY DNA -binding domain
10 1.3⋅10-3 8/199 (4.0%) 4.6 LRRNT_2 Leucine rich repeat N-terminal domain
11 3.5⋅10-3 2/6 (33.3%) 38 EGF_CA Calcium-binding EGF domain
12 3.7⋅10-3 3/25 (12.0%) 13.7 PGG Domain of unknown function
13 6.3⋅10-3 4/64 (6.2%) 7.1 LRR_6 Leucine Rich repeat
14 6.4⋅10-3 2/9 (22.2%) 25.3 LOR LURP-one-related
15 1.5⋅10-2 2/14 (14.3%) 16.3 Glyco_hydro_19 Chitinase class I
16 1.6⋅10-2 2/15 (13.3%) 15.2 Mlo Mlo family
17 2.4⋅10-2 2/19 (10.5%) 12 DUF3403 Domain of unknown function (DUF3403)
18 3.1⋅10-2 4/111 (3.6%) 4.1 TIR TIR domain
19 3.3⋅10-2 2/24 (8.3%) 9.5 GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
20 3.4⋅10-2 2/25 (8.0%) 9.1 NUDIX NUDIX domain
21 3.8⋅10-2 3/70 (4.3%) 4.9 Ank_2 Ankyrin repeats (3 copies)
22 3.8⋅10-2 2/28 (7.1%) 8.1 PAN_2 PAN-like domain
23 4.2⋅10-2 4/131 (3.1%) 3.5 NB-ARC NB-ARC domain
24 4.7⋅10-2 5/207 (2.4%) 2.8 p450 Cytochrome P450
25 4.7⋅10-2 2/34 (5.9%) 6.7 Aminotran_1_2 Aminotransferase class I and II
26 4.7⋅10-2 2/33 (6.1%) 6.9 S_locus_glycop S-locus glycoprotein domain

darkred Module: 167 genes
Probeset Symbol Name Description Average Ranking
AT3G56710_at SIB1 sigma factor binding protein 1 sigma factor binding protein 1 33.335605877557
AT4G26070_at MEK1 MAP kinase/ ERK kinase 1 MAP kinase/ ERK kinase 1 33.879594557714
AT3G56400_at WRKY70 WRKY DNA-binding protein 70 WRKY DNA-binding protein 70 34.573543343769
AT5G24210_at AT5G24210 alpha/beta-Hydrolases superfamily protein 34.878355146165
AT2G37710_at RLK receptor lectin kinase receptor lectin kinase 34.962461300982
AT4G11890_at ARCK1 ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1 Protein kinase superfamily protein 35.084824074831
AT3G04210_at AT3G04210 Disease resistance protein (TIR-NBS class) 35.500098214239
AT1G21250_at WAK1 cell wall-associated kinase cell wall-associated kinase 36.166011615355
AT2G14560_at LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA LURP-one-like protein (DUF567) 36.912599756985
AT5G10760_at AT5G10760 Eukaryotic aspartyl protease family protein 37.129946999077
AT1G08450_at CRT3 calreticulin 3 calreticulin 3 37.604577305036
AT1G73805_at SARD1 SAR Deficient 1 Calmodulin binding protein-like protein 37.830904631366
AT5G10380_at RING1 RING/U-box superfamily protein 38.932169596001
AT3G60420_at AT3G60420 phosphoglycerate mutase family protein 40.614803754044
AT1G13470_at AT1G13470 hypothetical protein (DUF1262) 40.820031532855
AT5G60900_at RLK1 receptor-like protein kinase 1 receptor-like protein kinase 1 41.508577666604
AT3G57260_at BGL2 beta-1,3-glucanase 2 beta-1,3-glucanase 2 42.330583914072
AT2G32680_at RLP23 receptor like protein 23 receptor like protein 23 43.115647701178
AT1G21270_at WAK2 wall-associated kinase 2 wall-associated kinase 2 46.772659241786
AT1G23840_at AT1G23840 transmembrane protein 47.32088243321
AT3G47480_at AT3G47480 Calcium-binding EF-hand family protein 47.417911148272
AT1G75040_at PR5 pathogenesis-related gene 5 pathogenesis-related protein 5 48.07426039463
AT2G17040_at NAC036 NAC domain containing protein 36 NAC domain containing protein 36 49.351038550393
AT2G40750_at WRKY54 WRKY DNA-binding protein 54 WRKY DNA-binding protein 54 49.506109273336
AT4G03450_at AT4G03450 Ankyrin repeat family protein 49.670890168668
AT4G23610_at AT4G23610 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 50.279783685311
AT4G23130_at CRK5 cysteine-rich RLK (RECEPTOR-like protein kinase) 5 cysteine-rich RLK (RECEPTOR-like protein kinase) 5 50.35476373826
AT1G17610_at AT1G17610 Disease resistance protein (TIR-NBS class) 51.836331619944
AT2G18660_at PNP-A plant natriuretic peptide A plant natriuretic peptide A 52.582554717499
AT3G28930_at AIG2 AVRRPT2-INDUCED GENE 2 AIG2-like (avirulence induced gene) family protein 52.598689665602
AT4G29810_at MKK2 MAP kinase kinase 2 MAP kinase kinase 2 54.291910101813
AT2G14610_at PR1 pathogenesis-related gene 1 pathogenesis-related protein 1 54.523129018744
AT5G54610_at ANK ankyrin ankyrin 54.991042513728
AT4G23150_at CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 55.13589200258
AT5G12890_at AT5G12890 UDP-Glycosyltransferase superfamily protein 55.776252318464
AT1G67970_at HSFA8 heat shock transcription factor A8 heat shock transcription factor A8 56.525395768618
AT2G23200_at AT2G23200 Protein kinase superfamily protein 58.758297364903
AT3G45620_at AT3G45620 Transducin/WD40 repeat-like superfamily protein 58.891100399289
AT3G51430_at YLS2 YELLOW-LEAF-SPECIFIC GENE 2 Calcium-dependent phosphotriesterase superfamily protein 59.09603614284
AT2G04450_at NUDT6 nudix hydrolase homolog 6 nudix hydrolase homolog 6 60.617466837484
AT3G26600_at ARO4 armadillo repeat only 4 armadillo repeat only 4 61.074648036671
AT2G29990_at NDA2 alternative NAD(P)H dehydrogenase 2 alternative NAD(P)H dehydrogenase 2 61.373911169132
AT2G26440_at AT2G26440 Plant invertase/pectin methylesterase inhibitor superfamily 63.715449882056
AT1G74440_at AT1G74440 ER membrane protein, putative (DUF962) 65.061148359127
AT3G08870_at AT3G08870 Concanavalin A-like lectin protein kinase family protein 66.455908759841
AT4G28490_at HAE HAESA Leucine-rich receptor-like protein kinase family protein 66.873884225403
AT2G29120_at GLR2.7 glutamate receptor 2.7 glutamate receptor 2.7 67.007052303863
AT4G04490_at CRK36 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 67.352895060258
AT4G23260_at CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 67.711806394529
AT3G13950_at AT3G13950 ankyrin 67.939739914788
AT3G28540_at AT3G28540 P-loop containing nucleoside triphosphate hydrolases superfamily protein 68.504098054315
AT1G35710_at AT1G35710 kinase family with leucine-rich repeat domain-containing protein 68.561921035752
AT3G57240_at BG3 beta-1,3-glucanase 3 beta-1,3-glucanase 3 69.391374182345
AT5G27830_at AT5G27830 folate receptor family protein 70.479935613178
AT5G13320_at PBS3 AVRPPHB SUSCEPTIBLE 3 Auxin-responsive GH3 family protein 70.949820346166
AT2G29350_at SAG13 senescence-associated gene 13 senescence-associated gene 13 70.990048203201
AT1G74710_at EDS16 ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16 ADC synthase superfamily protein 71.375388728482
AT3G63420_at GG1 Ggamma-subunit 1 Ggamma-subunit 1 71.689545659191
AT1G02450_at NIMIN1 NIM1-interacting 1 NIM1-interacting 1 71.776207122531
AT3G25010_at RLP41 receptor like protein 41 receptor like protein 41 72.422189117167
AT1G11310_at MLO2 MILDEW RESISTANCE LOCUS O 2 Seven transmembrane MLO family protein 72.701155799073
AT5G24530_at DMR6 DOWNY MILDEW RESISTANT 6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 74.265077624015
AT4G23220_at CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 cysteine-rich RECEPTOR-like kinase 74.57207969086
AT3G07520_at GLR1.4 glutamate receptor 1.4 glutamate receptor 1.4 74.783002157237
AT1G33960_at AIG1 AVRRPT2-INDUCED GENE 1 P-loop containing nucleoside triphosphate hydrolases superfamily protein 75.396568238037
AT3G50770_at CML41 calmodulin-like 41 calmodulin-like 41 76.163233803777
AT2G24850_at TAT3 tyrosine aminotransferase 3 tyrosine aminotransferase 3 76.576463696367
AT2G30770_at CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 cytochrome P450 family 71 polypeptide 76.636622959882
AT1G69720_at HO3 heme oxygenase 3 heme oxygenase 3 77.269755403087
AT4G21380_at RK3 receptor kinase 3 receptor kinase 3 77.601507458198
AT4G04220_at RLP46 receptor like protein 46 receptor like protein 46 78.302392081673
AT4G25940_at AT4G25940 ENTH/ANTH/VHS superfamily protein 78.46534775663
AT2G32160_at AT2G32160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 78.964801059671
AT3G14620_at CYP72A8 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72, subfamily A, polypeptide 8 80.093225303465
AT5G64000_at SAL2 Inositol monophosphatase family protein 80.463818048127
AT1G35230_at AGP5 arabinogalactan protein 5 arabinogalactan protein 5 81.367521159519
AT4G23320_at CRK24 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 81.42658529081
AT3G19553_at PUT5 POLYAMINE UPTAKE TRANSPORTER 5 Amino acid permease family protein 81.57968477575
AT4G04500_at CRK37 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 81.679852869855
AT1G59620_at CW9 Disease resistance protein (CC-NBS-LRR class) family 82.024089432322
AT5G49570_at PNG1 peptide-N-glycanase 1 peptide-N-glycanase 1 82.430821540382
AT2G43570_at CHI chitinase, putative chitinase 82.936553601507
AT3G45860_at CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 82.938962892401
AT5G36220_at CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 1 cytochrome p450 81d1 83.018396483061
AT3G45290_at MLO3 MILDEW RESISTANCE LOCUS O 3 Seven transmembrane MLO family protein 83.176168532158
AT5G37850_at SOS4 SALT OVERLY SENSITIVE 4 pfkB-like carbohydrate kinase family protein 83.568079850784
AT4G22260_at IM IMMUTANS Alternative oxidase family protein 84.107103931525
AT3G26220_at CYP71B3 cytochrome P450, family 71, subfamily B, polypeptide 3 cytochrome P450, family 71, subfamily B, polypeptide 3 84.575893532288
AT1G31940_at AT1G31940 cystic fibrosis transmembrane conductance regulator 85.217129953952
AT2G40600_at AT2G40600 appr-1-p processing enzyme family protein 85.378187399722
AT3G28890_at RLP43 receptor like protein 43 receptor like protein 43 86.298609529736
AT5G58670_at PLC1 phospholipase C1 phospholipase C1 86.670297406623
AT2G13790_at SERK4 somatic embryogenesis receptor-like kinase 4 somatic embryogenesis receptor-like kinase 4 88.296787785973
AT1G35350_at AT1G35350 EXS (ERD1/XPR1/SYG1) family protein 88.858152564087
AT1G17600_at AT1G17600 Disease resistance protein (TIR-NBS-LRR class) family 89.44134697787
AT3G57700_at AT3G57700 Protein kinase superfamily protein 90.691549924992
AT5G52810_at AT5G52810 NAD(P)-binding Rossmann-fold superfamily protein 90.870640548053
AT5G22270_at AT5G22270 hypothetical protein 91.685856975732
AT5G55420_at AT5G55420 pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 92.070978474568
AT5G40170_at RLP54 receptor like protein 54 receptor like protein 54 92.180199661726
AT2G39030_at NATA1 N-acetyltransferase activity 1 Acyl-CoA N-acyltransferases (NAT) superfamily protein 93.677683465068
AT3G05650_at RLP32 receptor like protein 32 receptor like protein 32 93.739010869622
AT3G47540_at AT3G47540 Chitinase family protein 94.606282582356
AT1G21520_at AT1G21520 hypothetical protein 94.67512989485
AT1G05805_at AT1G05805 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 95.094273501451
AT1G13110_at CYP71B7 cytochrome P450, family 71 subfamily B, polypeptide 7 cytochrome P450, family 71 subfamily B, polypeptide 7 95.559558679097
AT1G22070_at TGA3 TGA1A-related gene 3 transcription factor TGA3 95.81472448733
AT5G05090_at AT5G05090 Homeodomain-like superfamily protein 95.999655815587
AT5G22570_at WRKY38 WRKY DNA-binding protein 38 WRKY DNA-binding protein 38 96.35593883252
AT2G15042_at AT2G15042 Leucine-rich repeat (LRR) family protein 96.371781745363
AT3G57460_at AT3G57460 catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding protein 96.709374505669
AT4G11000_at AT4G11000 Ankyrin repeat family protein 97.670827589683
AT1G32960_at SBT3.3 Subtilase family protein 97.753984629906
AT1G70810_at AT1G70810 Calcium-dependent lipid-binding (CaLB domain) family protein 98.093986681106
AT2G24160_at AT2G24160 pseudogene of receptor like protein 37 99.133267161852
AT3G25070_at RIN4 RPM1 interacting protein 4 RPM1 interacting protein 4 99.861749117376
AT1G03290_at AT1G03290 ELKS/Rab6-interacting/CAST family protein 100.40975328235
AT3G05660_at RLP33 receptor like protein 33 receptor like protein 33 100.49539262229
AT3G01080_at WRKY58 WRKY DNA-binding protein 58 WRKY DNA-binding protein 58 100.9512596628
AT4G23200_at CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 101.21277723794
AT3G22060_at AT3G22060 Receptor-like protein kinase-related family protein 101.5882615732
AT4G23310_at CRK23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 102.46728770514
AT2G32800_at AP4.3A protein kinase family protein 102.74362606971
AT4G10500_at AT4G10500 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 103.13159491233
AT2G26400_at ARD3 acireductone dioxygenase 3 acireductone dioxygenase 3 103.72997515962
AT5G49760_at AT5G49760 Leucine-rich repeat protein kinase family protein 105.20621339781
AT3G04110_at GLR1.1 glutamate receptor 1.1 glutamate receptor 1.1 105.45583053611
AT2G29110_at GLR2.8 glutamate receptor 2.8 glutamate receptor 2.8 105.59754064592
AT5G64800_at CLE21 CLAVATA3/ESR-RELATED 21 CLAVATA3/ESR-RELATED 21 105.7142087322
AT1G13750_at AT1G13750 Purple acid phosphatases superfamily protein 106.06873953758
AT2G25000_at WRKY60 WRKY DNA-binding protein 60 WRKY DNA-binding protein 60 106.8304405039
AT2G44490_at PEN2 PENETRATION 2 Glycosyl hydrolase superfamily protein 107.63616578564
AT2G39400_at AT2G39400 alpha/beta-Hydrolases superfamily protein 108.24359912598
AT2G13810_at ALD1 AGD2-like defense response protein 1 AGD2-like defense response protein 1 108.9857337299
AT3G03870_at AT3G03870 transmembrane protein 109.09334872313
AT2G25190_at AT2G25190 PPPDE putative thiol peptidase family protein 111.35983437429
AT1G22570_at AT1G22570 Major facilitator superfamily protein 112.35414142503
AT4G29190_at OZF2 oxidation-related zinc finger 2 Zinc finger C-x8-C-x5-C-x3-H type family protein 113.72619608429
AT1G21525_at AT1G21525 pseudogene of hypothetical protein 114.12329102878
AT5G53550_at YSL3 YELLOW STRIPE like 3 YELLOW STRIPE like 3 114.3558971132
AT1G67800_at AT1G67800 Copine (Calcium-dependent phospholipid-binding protein) family 114.8698061616
AT5G60800_at AT5G60800 Heavy metal transport/detoxification superfamily protein 116.10986088344
AT4G11330_at MPK5 MAP kinase 5 MAP kinase 5 116.13424582763
AT2G43850_at AT2G43850 Integrin-linked protein kinase family 116.17206439377
AT2G17120_at LYM2 lysM domain GPI-anchored protein 2 precursor lysm domain GPI-anchored protein 2 precursor 117.06430512122
AT1G64400_at LACS3 long-chain acyl-CoA synthetase 3 AMP-dependent synthetase and ligase family protein 117.94355027961
AT2G30990_at AT2G30990 arginine N-methyltransferase, putative (DUF688) 118.27873374902
AT4G23880_at AT4G23880 hypothetical protein 118.64071145352
AT4G36670_at PMT6 polyol/monosaccharide transporter 6 Major facilitator superfamily protein 119.58055392831
AT1G11330_at AT1G11330 S-locus lectin protein kinase family protein 119.61822647682
AT2G01670_at NUDT17 nudix hydrolase homolog 17 nudix hydrolase homolog 17 120.21375938033
AT1G02270_at AT1G02270 Calcium-binding endonuclease/exonuclease/phosphatase family 121.6215153501
AT1G72890_at AT1G72890 Disease resistance protein (TIR-NBS class) 122.67707679658
AT1G59710_at AT1G59710 actin cross-linking protein (DUF569) 123.47433305578
AT5G44570_at AT5G44570 transmembrane protein 124.69467539759
AT3G15810_at AT3G15810 LURP-one-like protein (DUF567) 125.82098238575
AT3G51920_at CAM9 calmodulin 9 calmodulin 9 131.0746237004
AT1G72060_at AT1G72060 serine-type endopeptidase inhibitor 132.64058977216
AT2G18350_at HB24 homeobox protein 24 homeobox protein 24 134.53648267866
AT4G00330_at CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 calmodulin-binding receptor-like cytoplasmic kinase 2 135.037396158
AT5G11910_at AT5G11910 alpha/beta-Hydrolases superfamily protein 135.69608168643
AT5G56250_at HAP8 HAPLESS 8 hapless 8 137.8267709418
AT4G19420_at AT4G19420 Pectinacetylesterase family protein 141.91862298422
AT1G74680_at AT1G74680 Exostosin family protein 142.64002308469
AT4G25000_at AMY1 alpha-amylase-like alpha-amylase-like protein 142.67594342165
AT2G15130_at AT2G15130 Plant basic secretory protein (BSP) family protein 146.27009437258
AT1G53100_at AT1G53100 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 147.16642359367

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