lightsteelblue1⬤ |
||
|---|---|---|
| Trait | PCC | P value |
| Flower | 0.47 | 8.0⋅10-193 |
| Inflorescence | 0.38 | 2.0⋅10-119 |
| Nectary | 0.31 | 7.0⋅10-81 |
| Flower bud | 0.3 | 7.0⋅10-75 |
| Stamen | 0.24 | 1.0⋅10-45 |
| Pistil | 0.095 | 2.0⋅10-8 |
| Gynoecium | 0.068 | 6.0⋅10-5 |
| Rosette | -0.064 | 2.0⋅10-4 |
| Leaf | -0.07 | 3.0⋅10-5 |
| Aerial tissue | -0.071 | 2.0⋅10-5 |
| Root | -0.077 | 5.0⋅10-6 |
| Seedling | -0.17 | 5.0⋅10-25 |
| Module Enrichments |
|---|
| Gene Ontology: Biological Process | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Biological Process |
| 1 | 4.0⋅10-5 | 3/8 (37.5%) | 209.5 | GO:0080086 | stamen filament development |
| 2 | 1.3⋅10-4 | 3/14 (21.4%) | 119.7 | GO:0046246 | terpene biosynthetic process |
| 3 | 2.7⋅10-4 | 3/20 (15.0%) | 83.8 | GO:0042214 | terpene metabolic process |
| 4 | 3.8⋅10-4 | 2/4 (50.0%) | 279.3 | GO:0043692 | monoterpene metabolic process |
| 5 | 3.8⋅10-4 | 2/4 (50.0%) | 279.3 | GO:0043693 | monoterpene biosynthetic process |
| 6 | 3.8⋅10-4 | 2/4 (50.0%) | 279.3 | GO:0071836 | nectar secretion |
| 7 | 3.8⋅10-4 | 5/185 (2.7%) | 15.1 | GO:0048437 | floral organ development |
| 8 | 7.3⋅10-4 | 4/110 (3.6%) | 20.3 | GO:0016114 | terpenoid biosynthetic process |
| 9 | 1.0⋅10-3 | 4/124 (3.2%) | 18 | GO:0006721 | terpenoid metabolic process |
| 10 | 1.3⋅10-3 | 4/134 (3.0%) | 16.7 | GO:0008299 | isoprenoid biosynthetic process |
| 11 | 1.4⋅10-3 | 2/9 (22.2%) | 124.1 | GO:0080027 | response to herbivore |
| 12 | 1.5⋅10-3 | 4/150 (2.7%) | 14.9 | GO:0006720 | isoprenoid metabolic process |
| 13 | 1.5⋅10-3 | 4/147 (2.7%) | 15.2 | GO:0048438 | floral whorl development |
| 14 | 2.0⋅10-3 | 3/72 (4.2%) | 23.3 | GO:0071370 | cellular response to gibberellin stimulus |
| 15 | 2.0⋅10-3 | 3/72 (4.2%) | 23.3 | GO:0071395 | cellular response to jasmonic acid stimulus |
| 16 | 2.0⋅10-3 | 3/70 (4.3%) | 23.9 | GO:0009867 | jasmonic acid mediated signaling pathway |
| 17 | 2.0⋅10-3 | 3/70 (4.3%) | 23.9 | GO:0010476 | gibberellin mediated signaling pathway |
| 18 | 2.0⋅10-3 | 3/70 (4.3%) | 23.9 | GO:0048443 | stamen development |
| 19 | 2.0⋅10-3 | 3/70 (4.3%) | 23.9 | GO:0048466 | androecium development |
| 20 | 2.0⋅10-3 | 3/69 (4.3%) | 24.3 | GO:0009740 | gibberellic acid mediated signaling pathway |
| 21 | 2.6⋅10-3 | 4/197 (2.0%) | 11.3 | GO:0009753 | response to jasmonic acid |
| 22 | 6.4⋅10-3 | 5/443 (1.1%) | 6.3 | GO:0009908 | flower development |
| 23 | 6.8⋅10-3 | 5/454 (1.1%) | 6.2 | GO:0090567 | reproductive shoot system development |
| 24 | 7.0⋅10-3 | 5/461 (1.1%) | 6.1 | GO:0008610 | lipid biosynthetic process |
| 25 | 1.1⋅10-2 | 3/141 (2.1%) | 11.9 | GO:0009739 | response to gibberellin |
| 26 | 1.8⋅10-2 | 6/855 (0.7%) | 3.9 | GO:0006629 | lipid metabolic process |
| 27 | 1.8⋅10-2 | 5/584 (0.9%) | 4.8 | GO:0044255 | cellular lipid metabolic process |
| 28 | 3.0⋅10-2 | 4/415 (1.0%) | 5.4 | GO:0048827 | phyllome development |
| 29 | 4.2⋅10-2 | 3/237 (1.3%) | 7.1 | GO:0006357 | regulation of transcription by RNA polymerase II |
| 30 | 4.3⋅10-2 | 5/738 (0.7%) | 3.8 | GO:0048367 | shoot system development |
| Gene Ontology: Molecular Function | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Molecular Function |
| 1 | 1.6⋅10-6 | 4/26 (15.4%) | 97.7 | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates |
| 2 | 1.6⋅10-6 | 4/23 (17.4%) | 110.5 | GO:0010333 | terpene synthase activity |
| 3 | 1.2⋅10-4 | 2/3 (66.7%) | 423.5 | GO:0050551 | myrcene synthase activity |
| 4 | 1.7⋅10-4 | 2/4 (50.0%) | 317.7 | GO:0034768 | (E)-beta-ocimene synthase activity |
| 5 | 3.0⋅10-4 | 4/117 (3.4%) | 21.7 | GO:0000287 | magnesium ion binding |
| 6 | 1.9⋅10-3 | 4/197 (2.0%) | 12.9 | GO:0016835 | carbon-oxygen lyase activity |
| 7 | 6.5⋅10-3 | 3/130 (2.3%) | 14.7 | GO:0001134 | transcription regulator recruiting activity |
| 8 | 6.5⋅10-3 | 3/130 (2.3%) | 14.7 | GO:0001135 | RNA polymerase II transcription regulator recruiting activity |
| 9 | 7.8⋅10-3 | 3/144 (2.1%) | 13.2 | GO:0001076 | obsolete transcription factor activity, RNA polymerase II transcription factor binding |
| 10 | 9.7⋅10-3 | 3/177 (1.7%) | 10.8 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding |
| 11 | 9.7⋅10-3 | 3/177 (1.7%) | 10.8 | GO:0001012 | RNA polymerase II regulatory region DNA binding |
| 12 | 9.7⋅10-3 | 3/173 (1.7%) | 11 | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| 13 | 9.7⋅10-3 | 3/165 (1.8%) | 11.6 | GO:0001085 | RNA polymerase II transcription factor binding |
| 14 | 1.2⋅10-2 | 4/406 (1.0%) | 6.3 | GO:0016829 | lyase activity |
| 15 | 1.5⋅10-2 | 3/219 (1.4%) | 8.7 | GO:0000989 | obsolete transcription factor activity, transcription factor binding |
| 16 | 1.5⋅10-2 | 3/225 (1.3%) | 8.5 | GO:0000988 | obsolete transcription factor activity, protein binding |
| 17 | 2.5⋅10-2 | 3/275 (1.1%) | 6.9 | GO:0008134 | transcription factor binding |
| 18 | 4.6⋅10-2 | 6/1439 (0.4%) | 2.6 | GO:0001067 | regulatory region nucleic acid binding |
| 19 | 4.6⋅10-2 | 6/1436 (0.4%) | 2.7 | GO:0044212 | transcription regulatory region DNA binding |
| 20 | 4.6⋅10-2 | 6/1436 (0.4%) | 2.7 | GO:1990837 | sequence-specific double-stranded DNA binding |
| 21 | 4.6⋅10-2 | 6/1428 (0.4%) | 2.7 | GO:0003700 | DNA-binding transcription factor activity |
| 22 | 4.6⋅10-2 | 6/1423 (0.4%) | 2.7 | GO:0000976 | transcription regulatory region sequence-specific DNA binding |
| Gene Ontology: Cellular Component | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Cellular Component |
| Plant Ontology: Plant Anatomy | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Anatomy |
| 1 | 3.3⋅10-8 | 4/10 (40.0%) | 284.3 | PO:0009035 | nectary |
| 2 | 3.3⋅10-8 | 4/9 (44.4%) | 315.9 | PO:0009056 | flower nectary |
| 3 | 1.0⋅10-7 | 4/14 (28.6%) | 203 | PO:0005656 | portion of secretory tissue |
| 4 | 6.9⋅10-3 | 6/667 (0.9%) | 6.4 | PO:0000019 | gynoecium primordium |
| 5 | 3.3⋅10-2 | 27/15404 (0.2%) | 1.2 | PO:0009031 | sepal |
| 6 | 3.3⋅10-2 | 27/15404 (0.2%) | 1.2 | PO:0009060 | calyx |
| 7 | 3.3⋅10-2 | 27/15391 (0.2%) | 1.2 | PO:0004704 | sepal primordium |
| 8 | 3.3⋅10-2 | 27/15391 (0.2%) | 1.2 | PO:0025485 | sepal anlagen |
| Plant Ontology: Plant Structure Development Stage | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Structure Development Stage |
| WikiPathways | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | WikiPathways | Description |
| KEGG | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Entry | Name |
| 1 | 9.8⋅10-8 | 3/5 (60.0%) | 343.1 | ath00902 | Monoterpenoid biosynthesis - Arabidopsis thaliana (thale cress) |
| AraCyc | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | PathwayID | Pathway Name |
| 1 | 2.3⋅10-5 | 2/3 (66.7%) | 225.1 | PWY-3041 | monoterpene biosynthesis |
| AtRegNet | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| Plant Cistrome Database | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| Pfam | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Family | Summary |
| 1 | 1.3⋅10-7 | 4/27 (14.8%) | 100 | Terpene_synth_C | Terpene synthase family, metal binding domain |
| 2 | 1.3⋅10-7 | 4/26 (15.4%) | 103.9 | Terpene_synth | Terpene synthase, N-terminal domain |
| 3 | 4.9⋅10-3 | 3/212 (1.4%) | 9.6 | Myb_DNA-binding | Myb-like DNA-binding domain |
| 4 | 3.7⋅10-2 | 2/207 (1.0%) | 6.5 | p450 | Cytochrome P450 |
| lightsteelblue1 Module: 27 genes | ||||
|---|---|---|---|---|
| Probeset | Symbol | Name | Description | Average Ranking |
| AT3G27810_at | MYB21 | myb domain protein 21 | myb domain protein 21 | 6.2443181818182 |
| AT5G44630_at | AT5G44630 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | 6.4493006993007 | |
| AT1G61680_at | TPS14 | terpene synthase 14 | terpene synthase 14 | 9.1201923076923 |
| AT1G72290_at | AT1G72290 | Kunitz family trypsin and protease inhibitor protein | 9.3251748251748 | |
| AT2G45580_at | CYP76C3 | cytochrome P450, family 76, subfamily C, polypeptide 3 | cytochrome P450, family 76, subfamily C, polypeptide 3 | 9.4628496503496 |
| AT2G39060_at | SWEET9 | Nodulin MtN3 family protein | 10.233828671329 | |
| AT1G66120_at | AAE11 | acyl-activating enzyme 11 | AMP-dependent synthetase and ligase family protein | 10.414335664336 |
| AT1G35310_at | MLP168 | MLP-like protein 168 | MLP-like protein 168 | 10.711101398601 |
| AT3G01530_at | MYB57 | myb domain protein 57 | myb domain protein 57 | 11.423951048951 |
| AT1G30795_at | AT1G30795 | Glycine-rich protein family | 11.962412587413 | |
| AT3G12000_at | AT3G12000 | S-locus related protein SLR1, putative (S1) | 12.256118881119 | |
| AT1G25330_at | CES | CESTA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 12.473339160839 |
| AT5G40350_at | MYB24 | myb domain protein 24 | myb domain protein 24 | 12.583479020979 |
| AT2G36190_at | cwINV4 | cell wall invertase 4 | cell wall invertase 4 | 12.617132867133 |
| AT2G24210_at | TPS10 | terpene synthase 10 | terpene synthase 10 | 12.968968531469 |
| AT3G14380_at | AT3G14380 | Uncharacterized protein family (UPF0497) | 13.758304195804 | |
| AT3G25810_at | AT3G25810 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | 14.073426573427 | |
| AT3G53300_at | CYP71B31 | cytochrome P450, family 71, subfamily B, polypeptide 31 | cytochrome P450, family 71, subfamily B, polypeptide 31 | 14.440559440559 |
| AT3G26140_at | AT3G26140 | Cellulase (glycosyl hydrolase family 5) protein | 16.202797202797 | |
| AT4G12530_at | AT4G12530 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 17.065559440559 | |
| AT5G49130_at | AT5G49130 | MATE efflux family protein | 17.120629370629 | |
| AT1G69180_at | CRC | CRABS CLAW | Plant-specific transcription factor YABBY family protein | 17.377622377622 |
| AT1G75300_at | AT1G75300 | NmrA-like negative transcriptional regulator family protein | 19.595716783217 | |
| AT5G18000_at | VDD | VERDANDI | VERDANDI | 19.730332167832 |
| AT2G30650_at | AT2G30650 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | 20.733828671329 | |
| AT1G70270_at | AT1G70270 | transcription factor | 23.107954545455 | |
| AT1G23010_at | LPR1 | Low Phosphate Root1 | Cupredoxin superfamily protein | 26.546765734266 |
Powered by