violet⬤ |
||
|---|---|---|
| Trait | PCC | P value |
| Cell culture | 0.22 | 2.0⋅10-40 |
| Seed | 0.19 | 9.0⋅10-30 |
| Protoplast | 0.12 | 7.0⋅10-12 |
| Root | 0.072 | 2.0⋅10-5 |
| Leaf | -0.069 | 5.0⋅10-5 |
| Rosette | -0.085 | 5.0⋅10-7 |
| Rosette leaf | -0.099 | 4.0⋅10-9 |
| Module Enrichments |
|---|
| Gene Ontology: Biological Process | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Biological Process |
| 1 | 2.5⋅10-42 | 29/184 (15.8%) | 48.9 | GO:0009408 | response to heat |
| 2 | 1.2⋅10-29 | 29/496 (5.8%) | 18.1 | GO:0009266 | response to temperature stimulus |
| 3 | 1.6⋅10-22 | 15/72 (20.8%) | 64.7 | GO:0009644 | response to high light intensity |
| 4 | 4.9⋅10-22 | 14/58 (24.1%) | 74.9 | GO:0042542 | response to hydrogen peroxide |
| 5 | 6.8⋅10-19 | 15/125 (12.0%) | 37.2 | GO:0009642 | response to light intensity |
| 6 | 6.3⋅10-18 | 15/146 (10.3%) | 31.9 | GO:0000302 | response to reactive oxygen species |
| 7 | 1.1⋅10-15 | 30/1771 (1.7%) | 5.3 | GO:0009628 | response to abiotic stimulus |
| 8 | 1.8⋅10-12 | 16/418 (3.8%) | 11.9 | GO:0006979 | response to oxidative stress |
| 9 | 3.8⋅10-11 | 31/2826 (1.1%) | 3.4 | GO:0006950 | response to stress |
| 10 | 2.5⋅10-10 | 18/806 (2.2%) | 6.9 | GO:0010035 | response to inorganic substance |
| 11 | 8.8⋅10-9 | 15/637 (2.4%) | 7.3 | GO:0009416 | response to light stimulus |
| 12 | 1.4⋅10-8 | 15/663 (2.3%) | 7 | GO:0009314 | response to radiation |
| 13 | 8.0⋅10-8 | 10/257 (3.9%) | 12.1 | GO:0006457 | protein folding |
| 14 | 2.8⋅10-7 | 35/5155 (0.7%) | 2.1 | GO:0050896 | response to stimulus |
| 15 | 1.5⋅10-6 | 5/39 (12.8%) | 39.8 | GO:0010286 | heat acclimation |
| 16 | 3.7⋅10-6 | 17/1346 (1.3%) | 3.9 | GO:1901700 | response to oxygen-containing compound |
| 17 | 2.3⋅10-5 | 22/2538 (0.9%) | 2.7 | GO:0042221 | response to chemical |
| 18 | 7.4⋅10-4 | 3/27 (11.1%) | 34.5 | GO:0034605 | cellular response to heat |
| 19 | 1.1⋅10-2 | 2/17 (11.8%) | 36.5 | GO:0043484 | regulation of RNA splicing |
| Gene Ontology: Molecular Function | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Molecular Function |
| 1 | 4.2⋅10-2 | 2/19 (10.5%) | 47.5 | GO:0051087 | chaperone binding |
| Gene Ontology: Cellular Component | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Cellular Component |
| 1 | 1.2⋅10-3 | 54/15923 (0.3%) | 1.2 | GO:0005622 | intracellular |
| 2 | 1.2⋅10-3 | 44/10564 (0.4%) | 1.5 | GO:0005737 | cytoplasm |
| 3 | 1.2⋅10-3 | 54/15887 (0.3%) | 1.2 | GO:0044424 | intracellular part |
| Plant Ontology: Plant Anatomy | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Anatomy |
| 1 | 4.0⋅10-7 | 37/5375 (0.7%) | 2.3 | PO:0000084 | plant sperm cell |
| 2 | 4.0⋅10-7 | 37/5375 (0.7%) | 2.3 | PO:0025525 | spermatogenous cell |
| 3 | 5.2⋅10-7 | 37/5499 (0.7%) | 2.3 | PO:0025006 | plant gamete |
| 4 | 1.0⋅10-6 | 33/4615 (0.7%) | 2.4 | PO:0020099 | microgametophyte vegetative cell |
| 5 | 1.0⋅10-6 | 33/4613 (0.7%) | 2.4 | PO:0025195 | pollen tube cell |
| 6 | 8.7⋅10-3 | 51/13599 (0.4%) | 1.3 | PO:0020122 | inflorescence axis |
| 7 | 8.7⋅10-3 | 51/13586 (0.4%) | 1.3 | PO:0009081 | higher order inflorescence axis |
| 8 | 8.7⋅10-3 | 51/13586 (0.4%) | 1.3 | PO:0025073 | branch |
| 9 | 8.7⋅10-3 | 51/13585 (0.4%) | 1.3 | PO:0009052 | inflorescence flower pedicel |
| 10 | 2.6⋅10-2 | 46/12457 (0.4%) | 1.2 | PO:0025094 | sporangium |
| 11 | 2.6⋅10-2 | 46/12451 (0.4%) | 1.2 | PO:0025202 | microsporangium |
| 12 | 2.6⋅10-2 | 46/12431 (0.4%) | 1.2 | PO:0025277 | pollen sac |
| 13 | 2.6⋅10-2 | 50/14047 (0.4%) | 1.2 | PO:0009062 | gynoecium |
| 14 | 2.6⋅10-2 | 52/14914 (0.3%) | 1.2 | PO:0009026 | sporophyll |
| 15 | 2.6⋅10-2 | 52/14908 (0.3%) | 1.2 | PO:0009005 | root |
| 16 | 2.6⋅10-2 | 46/12404 (0.4%) | 1.2 | PO:0025017 | plant spore |
| 17 | 2.6⋅10-2 | 46/12395 (0.4%) | 1.2 | PO:0020048 | microspore |
| 18 | 2.6⋅10-2 | 46/12384 (0.4%) | 1.3 | PO:0025280 | microgametophyte |
| 19 | 2.6⋅10-2 | 46/12384 (0.4%) | 1.3 | PO:0025281 | pollen |
| 20 | 2.6⋅10-2 | 50/13986 (0.4%) | 1.2 | PO:0009028 | microsporophyll |
| 21 | 2.6⋅10-2 | 50/13984 (0.4%) | 1.2 | PO:0009029 | stamen |
| 22 | 2.6⋅10-2 | 50/13984 (0.4%) | 1.2 | PO:0009061 | androecium |
| 23 | 2.6⋅10-2 | 52/14844 (0.4%) | 1.2 | PO:0005029 | root primordium |
| 24 | 2.6⋅10-2 | 52/14844 (0.4%) | 1.2 | PO:0025433 | root anlagen |
| 25 | 2.6⋅10-2 | 50/13901 (0.4%) | 1.2 | PO:0009027 | megasporophyll |
| 26 | 2.6⋅10-2 | 50/13901 (0.4%) | 1.2 | PO:0009030 | carpel |
| 27 | 2.6⋅10-2 | 50/13899 (0.4%) | 1.2 | PO:0004705 | stamen primordium |
| 28 | 2.6⋅10-2 | 50/13899 (0.4%) | 1.2 | PO:0025486 | stamen anlagen |
| 29 | 2.6⋅10-2 | 50/13875 (0.4%) | 1.2 | PO:0004703 | carpel primordium |
| 30 | 2.6⋅10-2 | 50/13875 (0.4%) | 1.2 | PO:0006005 | carpel anlagen |
| 31 | 2.7⋅10-2 | 52/14966 (0.3%) | 1.2 | PO:0025025 | root system |
| 32 | 4.8⋅10-2 | 51/14788 (0.3%) | 1.2 | PO:0009049 | inflorescence |
| Plant Ontology: Plant Structure Development Stage | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Structure Development Stage |
| 1 | 3.9⋅10-8 | 35/4381 (0.8%) | 2.6 | PO:0001017 | M germinated pollen stage |
| 2 | 4.2⋅10-8 | 35/4648 (0.8%) | 2.5 | PO:0028003 | gametophyte development stage |
| 3 | 4.2⋅10-8 | 35/4647 (0.8%) | 2.5 | PO:0007605 | androecium development stage |
| 4 | 4.2⋅10-8 | 35/4643 (0.8%) | 2.5 | PO:0001007 | pollen development stage |
| 5 | 4.2⋅10-8 | 35/4643 (0.8%) | 2.5 | PO:0025602 | microgametophyte development stage |
| WikiPathways | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | WikiPathways | Description |
| KEGG | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Entry | Name |
| 1 | 8.2⋅10-20 | 18/194 (9.3%) | 16.1 | ath04141 | Protein processing in endoplasmic reticulum - Arabidopsis thaliana (thale cress) |
| AraCyc | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | PathwayID | Pathway Name |
| AtRegNet | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| 1 | 1.1⋅10-31 | 56/5033 (1.1%) | 4.1 | HSF3 | heat shock factor 3 | heat shock factor 3 |
| 2 | 4.3⋅10-29 | 54/4851 (1.1%) | 4.1 | AT3G09735 | AT3G09735 | S1FA-like DNA-binding protein |
| 3 | 8.9⋅10-23 | 43/3124 (1.4%) | 5.1 | HSFC1 | heat shock transcription factor C1 | heat shock transcription factor C1 |
| 4 | 8.9⋅10-23 | 28/828 (3.4%) | 12.5 | HSFB2A | heat shock transcription factor B2A | heat shock transcription factor B2A |
| 5 | 1.2⋅10-8 | 15/683 (2.2%) | 8.1 | AT-HSFB2B | AT-HSFB2B | winged-helix DNA-binding transcription factor family protein |
| 6 | 2.1⋅10-2 | 7/524 (1.3%) | 5 | HSF A4A | heat shock transcription factor A4A | heat shock transcription factor A4A |
| Plant Cistrome Database | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| 1 | 1.1⋅10-28 | 54/4851 (1.1%) | 4.1 | AT3G09735 | AT3G09735 | S1FA-like DNA-binding protein |
| 2 | 4.8⋅10-26 | 42/2356 (1.8%) | 6.6 | AT-HSFB2B | AT-HSFB2B | winged-helix DNA-binding transcription factor family protein |
| 3 | 3.3⋅10-22 | 56/7546 (0.7%) | 2.8 | HSF3 | heat shock factor 3 | heat shock factor 3 |
| 4 | 3.5⋅10-16 | 23/821 (2.8%) | 10.4 | HSFB2A | heat shock transcription factor B2A | heat shock transcription factor B2A |
| 5 | 2.0⋅10-15 | 42/4477 (0.9%) | 3.5 | HSFC1 | heat shock transcription factor C1 | heat shock transcription factor C1 |
| 6 | 3.2⋅10-12 | 57/12389 (0.5%) | 1.7 | HSFA6B | heat shock transcription factor A6B | heat shock transcription factor A6B |
| 7 | 2.5⋅10-2 | 7/524 (1.3%) | 5 | HSF A4A | heat shock transcription factor A4A | heat shock transcription factor A4A |
| Pfam | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Family | Summary |
| 1 | 1.9⋅10-27 | 13/22 (59.1%) | 195.6 | HSP20 | Hsp20/alpha crystallin family |
| 2 | 5.5⋅10-5 | 3/14 (21.4%) | 70.9 | HSP70 | Hsp70 protein |
| 3 | 5.0⋅10-4 | 4/85 (4.7%) | 15.6 | DnaJ | DnaJ domain |
| 4 | 7.4⋅10-4 | 2/8 (25.0%) | 82.8 | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein |
| 5 | 9.5⋅10-4 | 2/10 (20.0%) | 66.2 | Clp_N | Clp amino terminal domain, pathogenicity island component |
| 6 | 9.7⋅10-4 | 2/11 (18.2%) | 60.2 | AAA_2 | AAA domain (Cdc48 subfamily) |
| 7 | 9.9⋅10-4 | 2/12 (16.7%) | 55.2 | TPR_11 | TPR repeat |
| 8 | 1.8⋅10-3 | 2/17 (11.8%) | 38.9 | TPR_1 | Tetratricopeptide repeat |
| 9 | 2.9⋅10-3 | 2/23 (8.7%) | 28.8 | HSF_DNA-bind | HSF-type DNA-binding |
| 10 | 3.5⋅10-3 | 3/95 (3.2%) | 10.5 | AAA | ATPase family associated with various cellular activities (AAA) |
| 11 | 6.1⋅10-3 | 2/37 (5.4%) | 17.9 | TPR_8 | Tetratricopeptide repeat |
| violet Module: 57 genes | ||||
|---|---|---|---|---|
| Probeset | Symbol | Name | Description | Average Ranking |
| AT1G74310_at | HSP101 | heat shock protein 101 | heat shock protein 101 | 14.699100992933 |
| AT5G12020_at | HSP17.6II | 17.6 kDa class II heat shock protein | 17.6 kDa class II heat shock protein | 15.213391179891 |
| AT1G53540_at | AT1G53540 | HSP20-like chaperones superfamily protein | 15.221173629126 | |
| AT4G25200_at | HSP23.6-MITO | mitochondrion-localized small heat shock protein 23.6 | mitochondrion-localized small heat shock protein 23.6 | 16.085674031667 |
| AT2G29500_at | AT2G29500 | HSP20-like chaperones superfamily protein | 17.229045531801 | |
| AT4G12400_at | Hop3 | Hop3 | stress-inducible protein | 17.280279989266 |
| AT3G46230_at | HSP17.4 | heat shock protein 17.4 | heat shock protein 17.4 | 17.446954110386 |
| AT5G37670_at | AT5G37670 | HSP20-like chaperones superfamily protein | 17.90806422757 | |
| AT2G32120_at | HSP70T-2 | heat-shock protein 70T-2 | heat-shock protein 70T-2 | 18.08511494767 |
| AT5G12030_at | HSP17.6A | heat shock protein 17.6A | heat shock protein 17.6A | 18.172667501565 |
| AT2G20560_at | AT2G20560 | DNAJ heat shock family protein | 18.311454512926 | |
| AT2G46240_at | BAG6 | BCL-2-associated athanogene 6 | BCL-2-associated athanogene 6 | 18.924322390196 |
| AT1G16030_at | Hsp70b | heat shock protein 70B | heat shock protein 70B | 19.070243313355 |
| AT4G10250_at | ATHSP22.0 | HSP20-like chaperones superfamily protein | 19.174657840594 | |
| AT4G27670_at | HSP21 | heat shock protein 21 | heat shock protein 21 | 19.787525717864 |
| AT1G54050_at | AT1G54050 | HSP20-like chaperones superfamily protein | 20.097526612398 | |
| AT2G26150_at | HSFA2 | heat shock transcription factor A2 | heat shock transcription factor A2 | 20.128656409339 |
| AT5G35320_at | AT5G35320 | DBH-like monooxygenase | 20.699369353252 | |
| AT5G59720_at | HSP18.2 | heat shock protein 18.2 | heat shock protein 18.2 | 21.366714375168 |
| AT5G48570_at | AT5G48570 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 21.692280168172 | |
| AT5G52640_at | HSP90.1 | heat shock protein 90.1 | heat shock-like protein | 21.727301189731 |
| AT4G21320_at | HSA32 | HEAT-STRESS-ASSOCIATED 32 | Aldolase-type TIM barrel family protein | 21.805125682082 |
| AT1G52560_at | AT1G52560 | HSP20-like chaperones superfamily protein | 21.896569460596 | |
| AT1G30070_at | AT1G30070 | SGS domain-containing protein | 23.8298595581 | |
| AT5G51440_at | AT5G51440 | HSP20-like chaperones superfamily protein | 24.675552374989 | |
| AT1G71000_at | AT1G71000 | Chaperone DnaJ-domain superfamily protein | 24.984256194651 | |
| AT1G17870_at | EGY3 | ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 | ethylene-dependent gravitropism-deficient and yellow-green-like 3 | 25.353273995885 |
| AT3G09350_at | Fes1A | Fes1A | Fes1A | 25.863024420789 |
| AT2G25140_at | CLPB4 | casein lytic proteinase B4 | casein lytic proteinase B4 | 26.087418373736 |
| AT1G72660_at | AT1G72660 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | 27.198363002057 | |
| AT3G09640_at | APX2 | ascorbate peroxidase 2 | ascorbate peroxidase 2 | 27.225601574381 |
| AT3G24500_at | MBF1C | multiprotein bridging factor 1C | multiprotein bridging factor 1C | 27.733406386976 |
| AT1G66080_at | AT1G66080 | hikeshi-like protein | 28.514245460238 | |
| AT3G12580_at | HSP70 | heat shock protein 70 | heat shock protein 70 | 28.93579479381 |
| AT3G07150_at | AT3G07150 | amino acid-ligase | 29.460461579748 | |
| AT3G08970_at | ATERDJ3A | DNAJ heat shock N-terminal domain-containing protein | 29.817805707129 | |
| AT5G25450_at | AT5G25450 | Cytochrome bd ubiquinol oxidase, 14kDa subunit | 30.22054745505 | |
| AT1G44414_at | AT1G44414 | zinc-ribbon domain protein | 31.542915287593 | |
| AT3G16050_at | PDX1.2 | pyridoxine biosynthesis 1.2 | pyridoxine biosynthesis 1.2 | 31.976786832454 |
| AT1G07350_at | SR45a | serine/arginine rich-like protein 45a | RNA-binding (RRM/RBD/RNP motifs) family protein | 35.331022452813 |
| AT5G47830_at | AT5G47830 | hypothetical protein | 35.398470346185 | |
| AT4G11660_at | AT-HSFB2B | winged-helix DNA-binding transcription factor family protein | 36.524979872976 | |
| AT4G23493_at | AT4G23493 | hypothetical protein | 36.844708829054 | |
| AT3G17611_at | RBL14 | RHOMBOID-like protein 14 | RHOMBOID-like protein 14 | 36.931612845514 |
| AT3G07090_at | AT3G07090 | PPPDE putative thiol peptidase family protein | 39.563377761875 | |
| AT3G12050_at | AT3G12050 | Aha1 domain-containing protein | 39.660658377315 | |
| AT3G53230_at | AtCDC48B | cell division cycle 48B | ATPase, AAA-type, CDC48 protein | 41.235307272565 |
| AT1G09140_at | SR30 | Serine/Arginine-Rich Protein Splicing Factor 30 | SERINE-ARGININE PROTEIN 30 | 41.518718132212 |
| AT2G47180_at | GolS1 | galactinol synthase 1 | galactinol synthase 1 | 42.301502817783 |
| AT1G62740_at | Hop2 | Hop2 | stress-inducible protein | 44.622618302174 |
| AT5G12110_at | AT5G12110 | elongation factor 1-beta 1 | 46.335405671348 | |
| AT3G14200_at | AT3G14200 | Chaperone DnaJ-domain superfamily protein | 47.865305483496 | |
| AT1G66510_at | AT1G66510 | AAR2 protein family | 48.0138205564 | |
| AT1G14200_at | AT1G14200 | RING/U-box superfamily protein | 49.353050362286 | |
| AT5G51740_at | AT5G51740 | Peptidase family M48 family protein | 49.371209410502 | |
| AT4G15420_at | AT4G15420 | Ubiquitin fusion degradation UFD1 family protein | 50.653367921997 | |
| AT3G17110_at | AT3G17110 | pseudogene of glycine-rich protein | 56.032337418374 | |
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