white⬤ |
||
|---|---|---|
| Trait | PCC | P value |
| Stem | 0.45 | 5.0⋅10-177 |
| Root | 0.35 | 1.0⋅10-101 |
| Stalk | 0.24 | 7.0⋅10-46 |
| Hypocotyl | 0.14 | 9.0⋅10-16 |
| Basal tissue | 0.13 | 2.0⋅10-15 |
| Silique | 0.11 | 3.0⋅10-10 |
| Replum | 0.088 | 2.0⋅10-7 |
| Rosette | -0.063 | 2.0⋅10-4 |
| Aerial tissue | -0.067 | 8.0⋅10-5 |
| Seedling | -0.086 | 3.0⋅10-7 |
| Seed | -0.096 | 1.0⋅10-8 |
| Rosette leaf | -0.11 | 4.0⋅10-10 |
| Leaf | -0.25 | 7.0⋅10-50 |
| Module Enrichments |
|---|
| Gene Ontology: Biological Process | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Biological Process |
| 1 | 8.4⋅10-38 | 24/59 (40.7%) | 72.8 | GO:0009834 | plant-type secondary cell wall biogenesis |
| 2 | 4.2⋅10-34 | 30/193 (15.5%) | 27.8 | GO:0042546 | cell wall biogenesis |
| 3 | 1.9⋅10-32 | 26/129 (20.2%) | 36.1 | GO:0009832 | plant-type cell wall biogenesis |
| 4 | 1.4⋅10-29 | 28/216 (13.0%) | 23.2 | GO:0071669 | plant-type cell wall organization or biogenesis |
| 5 | 2.3⋅10-29 | 38/613 (6.2%) | 11.1 | GO:0071554 | cell wall organization or biogenesis |
| 6 | 2.6⋅10-19 | 13/37 (35.1%) | 62.9 | GO:0045491 | xylan metabolic process |
| 7 | 6.0⋅10-17 | 11/28 (39.3%) | 70.3 | GO:0045492 | xylan biosynthetic process |
| 8 | 1.6⋅10-14 | 30/929 (3.2%) | 5.8 | GO:0044085 | cellular component biogenesis |
| 9 | 2.0⋅10-14 | 11/46 (23.9%) | 42.8 | GO:0044038 | cell wall macromolecule biosynthetic process |
| 10 | 2.0⋅10-14 | 11/46 (23.9%) | 42.8 | GO:0070589 | cellular component macromolecule biosynthetic process |
| 11 | 2.0⋅10-14 | 15/137 (10.9%) | 19.6 | GO:0044036 | cell wall macromolecule metabolic process |
| 12 | 2.0⋅10-14 | 11/45 (24.4%) | 43.8 | GO:0070592 | cell wall polysaccharide biosynthetic process |
| 13 | 2.7⋅10-14 | 13/87 (14.9%) | 26.8 | GO:0010410 | hemicellulose metabolic process |
| 14 | 3.7⋅10-13 | 13/106 (12.3%) | 22 | GO:0010383 | cell wall polysaccharide metabolic process |
| 15 | 1.5⋅10-12 | 14/150 (9.3%) | 16.7 | GO:0033692 | cellular polysaccharide biosynthetic process |
| 16 | 1.8⋅10-11 | 14/181 (7.7%) | 13.8 | GO:0000271 | polysaccharide biosynthetic process |
| 17 | 1.8⋅10-11 | 11/84 (13.1%) | 23.4 | GO:0009808 | lignin metabolic process |
| 18 | 5.0⋅10-11 | 14/196 (7.1%) | 12.8 | GO:0034637 | cellular carbohydrate biosynthetic process |
| 19 | 6.0⋅10-11 | 18/396 (4.5%) | 8.1 | GO:0005976 | polysaccharide metabolic process |
| 20 | 7.4⋅10-11 | 15/247 (6.1%) | 10.9 | GO:0044264 | cellular polysaccharide metabolic process |
| 21 | 8.8⋅10-11 | 19/467 (4.1%) | 7.3 | GO:0071555 | cell wall organization |
| 22 | 1.7⋅10-10 | 7/21 (33.3%) | 59.7 | GO:2000652 | regulation of secondary cell wall biogenesis |
| 23 | 2.5⋅10-10 | 19/499 (3.8%) | 6.8 | GO:0045229 | external encapsulating structure organization |
| 24 | 5.9⋅10-10 | 12/155 (7.7%) | 13.9 | GO:0009698 | phenylpropanoid metabolic process |
| 25 | 1.2⋅10-9 | 9/68 (13.2%) | 23.7 | GO:0009809 | lignin biosynthetic process |
| 26 | 1.2⋅10-9 | 6/15 (40.0%) | 71.6 | GO:0046271 | phenylpropanoid catabolic process |
| 27 | 1.2⋅10-9 | 6/15 (40.0%) | 71.6 | GO:0046274 | lignin catabolic process |
| 28 | 1.8⋅10-9 | 39/2552 (1.5%) | 2.7 | GO:0071840 | cellular component organization or biogenesis |
| 29 | 2.2⋅10-9 | 7/30 (23.3%) | 41.8 | GO:1903338 | regulation of cell wall organization or biogenesis |
| 30 | 6.4⋅10-9 | 14/293 (4.8%) | 8.6 | GO:0016051 | carbohydrate biosynthetic process |
| 31 | 1.2⋅10-8 | 10/122 (8.2%) | 14.7 | GO:0009699 | phenylpropanoid biosynthetic process |
| 32 | 3.0⋅10-8 | 5/12 (41.7%) | 74.6 | GO:0010413 | glucuronoxylan metabolic process |
| 33 | 3.0⋅10-8 | 5/12 (41.7%) | 74.6 | GO:0010417 | glucuronoxylan biosynthetic process |
| 34 | 3.8⋅10-8 | 23/1030 (2.2%) | 4 | GO:0005975 | carbohydrate metabolic process |
| 35 | 3.9⋅10-8 | 15/403 (3.7%) | 6.7 | GO:0044262 | cellular carbohydrate metabolic process |
| 36 | 1.1⋅10-7 | 8/81 (9.9%) | 17.7 | GO:0044087 | regulation of cellular component biogenesis |
| 37 | 2.6⋅10-6 | 13/407 (3.2%) | 5.7 | GO:0019748 | secondary metabolic process |
| 38 | 2.4⋅10-5 | 10/280 (3.6%) | 6.4 | GO:0044550 | secondary metabolite biosynthetic process |
| 39 | 1.8⋅10-4 | 9/281 (3.2%) | 5.7 | GO:0031328 | positive regulation of cellular biosynthetic process |
| 40 | 2.1⋅10-4 | 9/288 (3.1%) | 5.6 | GO:0009891 | positive regulation of biosynthetic process |
| 41 | 2.8⋅10-4 | 8/232 (3.4%) | 6.2 | GO:1902680 | positive regulation of RNA biosynthetic process |
| 42 | 2.8⋅10-4 | 8/232 (3.4%) | 6.2 | GO:1903508 | positive regulation of nucleic acid-templated transcription |
| 43 | 2.8⋅10-4 | 8/231 (3.5%) | 6.2 | GO:0045893 | positive regulation of transcription, DNA-templated |
| 44 | 3.4⋅10-4 | 8/240 (3.3%) | 6 | GO:0051254 | positive regulation of RNA metabolic process |
| 45 | 5.7⋅10-4 | 8/259 (3.1%) | 5.5 | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process |
| 46 | 5.9⋅10-4 | 8/261 (3.1%) | 5.5 | GO:0010557 | positive regulation of macromolecule biosynthetic process |
| 47 | 6.3⋅10-4 | 8/264 (3.0%) | 5.4 | GO:0010628 | positive regulation of gene expression |
| 48 | 6.7⋅10-4 | 6/138 (4.3%) | 7.8 | GO:0019439 | aromatic compound catabolic process |
| 49 | 7.3⋅10-4 | 4/47 (8.5%) | 15.2 | GO:0030244 | cellulose biosynthetic process |
| 50 | 7.8⋅10-4 | 6/143 (4.2%) | 7.5 | GO:1901361 | organic cyclic compound catabolic process |
| 51 | 8.7⋅10-4 | 6/147 (4.1%) | 7.3 | GO:0042545 | cell wall modification |
| 52 | 8.7⋅10-4 | 8/281 (2.8%) | 5.1 | GO:0051173 | positive regulation of nitrogen compound metabolic process |
| 53 | 1.3⋅10-3 | 9/378 (2.4%) | 4.3 | GO:0031325 | positive regulation of cellular metabolic process |
| 54 | 1.7⋅10-3 | 4/60 (6.7%) | 11.9 | GO:0051274 | beta-glucan biosynthetic process |
| 55 | 2.1⋅10-3 | 2/6 (33.3%) | 59.7 | GO:1901348 | positive regulation of secondary cell wall biogenesis |
| 56 | 2.1⋅10-3 | 2/6 (33.3%) | 59.7 | GO:1903340 | positive regulation of cell wall organization or biogenesis |
| 57 | 2.1⋅10-3 | 2/6 (33.3%) | 59.7 | GO:0010623 | programmed cell death involved in cell development |
| 58 | 2.1⋅10-3 | 9/408 (2.2%) | 3.9 | GO:0009893 | positive regulation of metabolic process |
| 59 | 2.4⋅10-3 | 5/119 (4.2%) | 7.5 | GO:0009664 | plant-type cell wall organization |
| 60 | 2.6⋅10-3 | 10/516 (1.9%) | 3.5 | GO:0048522 | positive regulation of cellular process |
| 61 | 2.6⋅10-3 | 4/69 (5.8%) | 10.4 | GO:0030243 | cellulose metabolic process |
| 62 | 2.6⋅10-3 | 3/30 (10.0%) | 17.9 | GO:0052386 | cell wall thickening |
| 63 | 3.4⋅10-3 | 3/33 (9.1%) | 16.3 | GO:0010089 | xylem development |
| 64 | 3.5⋅10-3 | 2/8 (25.0%) | 44.8 | GO:0048759 | xylem vessel member cell differentiation |
| 65 | 3.8⋅10-3 | 8/362 (2.2%) | 4 | GO:0010604 | positive regulation of macromolecule metabolic process |
| 66 | 4.3⋅10-3 | 2/9 (22.2%) | 39.8 | GO:1905177 | tracheary element differentiation |
| 67 | 4.3⋅10-3 | 2/9 (22.2%) | 39.8 | GO:0010047 | fruit dehiscence |
| 68 | 4.5⋅10-3 | 4/82 (4.9%) | 8.7 | GO:0051273 | beta-glucan metabolic process |
| 69 | 1.1⋅10-2 | 23/2294 (1.0%) | 1.8 | GO:0016043 | cellular component organization |
| 70 | 1.1⋅10-2 | 4/106 (3.8%) | 6.8 | GO:0009250 | glucan biosynthetic process |
| 71 | 1.2⋅10-2 | 2/15 (13.3%) | 23.9 | GO:0010215 | cellulose microfibril organization |
| 72 | 1.4⋅10-2 | 10/662 (1.5%) | 2.7 | GO:0030154 | cell differentiation |
| 73 | 1.4⋅10-2 | 2/17 (11.8%) | 21.1 | GO:0070726 | cell wall assembly |
| 74 | 1.4⋅10-2 | 2/17 (11.8%) | 21.1 | GO:0071668 | plant-type cell wall assembly |
| 75 | 1.6⋅10-2 | 10/684 (1.5%) | 2.6 | GO:0048518 | positive regulation of biological process |
| 76 | 1.7⋅10-2 | 5/197 (2.5%) | 4.5 | GO:0006073 | cellular glucan metabolic process |
| 77 | 1.7⋅10-2 | 5/197 (2.5%) | 4.5 | GO:0044042 | glucan metabolic process |
| 78 | 1.7⋅10-2 | 3/62 (4.8%) | 8.7 | GO:0010087 | phloem or xylem histogenesis |
| 79 | 2.2⋅10-2 | 2/22 (9.1%) | 16.3 | GO:0009900 | dehiscence |
| 80 | 2.4⋅10-2 | 4/136 (2.9%) | 5.3 | GO:0045488 | pectin metabolic process |
| 81 | 2.4⋅10-2 | 4/137 (2.9%) | 5.2 | GO:0010393 | galacturonan metabolic process |
| 82 | 2.5⋅10-2 | 13/1104 (1.2%) | 2.1 | GO:1901575 | organic substance catabolic process |
| 83 | 2.6⋅10-2 | 11/861 (1.3%) | 2.3 | GO:0048869 | cellular developmental process |
| 84 | 4.0⋅10-2 | 14/1306 (1.1%) | 1.9 | GO:0009056 | catabolic process |
| 85 | 4.5⋅10-2 | 11/933 (1.2%) | 2.1 | GO:0044248 | cellular catabolic process |
| Gene Ontology: Molecular Function | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Molecular Function |
| 1 | 5.1⋅10-9 | 6/14 (42.9%) | 82.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity |
| 2 | 8.3⋅10-8 | 6/23 (26.1%) | 49.9 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor |
| 3 | 5.8⋅10-7 | 6/33 (18.2%) | 34.8 | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors |
| 4 | 3.1⋅10-6 | 6/45 (13.3%) | 25.5 | GO:0016722 | oxidoreductase activity, oxidizing metal ions |
| 5 | 1.2⋅10-5 | 3/4 (75.0%) | 143.6 | GO:0080116 | glucuronoxylan glucuronosyltransferase activity |
| 6 | 2.0⋅10-5 | 9/205 (4.4%) | 8.4 | GO:0005507 | copper ion binding |
| 7 | 4.8⋅10-5 | 4/20 (20.0%) | 38.3 | GO:0015020 | glucuronosyltransferase activity |
| 8 | 5.0⋅10-4 | 8/243 (3.3%) | 6.3 | GO:0008194 | UDP-glycosyltransferase activity |
| 9 | 1.9⋅10-3 | 2/4 (50.0%) | 95.7 | GO:1990538 | xylan O-acetyltransferase activity |
| 10 | 2.4⋅10-3 | 3/23 (13.0%) | 25 | GO:0016760 | cellulose synthase (UDP-forming) activity |
| 11 | 2.6⋅10-3 | 2/5 (40.0%) | 76.6 | GO:0031176 | endo-1,4-beta-xylanase activity |
| 12 | 3.7⋅10-3 | 8/344 (2.3%) | 4.5 | GO:0016758 | transferase activity, transferring hexosyl groups |
| 13 | 3.9⋅10-3 | 8/351 (2.3%) | 4.4 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| 14 | 6.1⋅10-3 | 3/35 (8.6%) | 16.4 | GO:0016759 | cellulose synthase activity |
| 15 | 6.1⋅10-3 | 8/384 (2.1%) | 4 | GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| 16 | 1.5⋅10-2 | 2/14 (14.3%) | 27.4 | GO:0042285 | xylosyltransferase activity |
| 17 | 1.5⋅10-2 | 2/14 (14.3%) | 27.4 | GO:0097599 | xylanase activity |
| 18 | 1.6⋅10-2 | 3/54 (5.6%) | 10.6 | GO:0004650 | polygalacturonase activity |
| 19 | 1.6⋅10-2 | 9/569 (1.6%) | 3 | GO:0016757 | transferase activity, transferring glycosyl groups |
| 20 | 4.6⋅10-2 | 2/27 (7.4%) | 14.2 | GO:0004197 | cysteine-type endopeptidase activity |
| Gene Ontology: Cellular Component | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Cellular Component |
| 1 | 8.9⋅10-5 | 11/338 (3.3%) | 6.2 | GO:0000139 | Golgi membrane |
| 2 | 9.3⋅10-4 | 25/2023 (1.2%) | 2.4 | GO:0005576 | extracellular region |
| 3 | 1.2⋅10-3 | 11/503 (2.2%) | 4.2 | GO:0044431 | Golgi apparatus part |
| 4 | 2.4⋅10-2 | 6/241 (2.5%) | 4.7 | GO:0031225 | anchored component of membrane |
| 5 | 2.8⋅10-2 | 32/3767 (0.8%) | 1.6 | GO:0071944 | cell periphery |
| 6 | 3.5⋅10-2 | 13/1068 (1.2%) | 2.3 | GO:0098588 | bounding membrane of organelle |
| 7 | 3.7⋅10-2 | 35/4442 (0.8%) | 1.5 | GO:0031224 | intrinsic component of membrane |
| 8 | 3.7⋅10-2 | 7/398 (1.8%) | 3.4 | GO:0048046 | apoplast |
| 9 | 3.8⋅10-2 | 3/71 (4.2%) | 8.1 | GO:0005615 | extracellular space |
| 10 | 4.9⋅10-2 | 2/27 (7.4%) | 14.1 | GO:0005764 | lysosome |
| Plant Ontology: Plant Anatomy | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Anatomy |
| 1 | 7.0⋅10-25 | 19/77 (24.7%) | 46.4 | PO:0005352 | xylem |
| 2 | 4.3⋅10-16 | 28/659 (4.2%) | 8 | PO:0000034 | vascular system |
| 3 | 1.1⋅10-14 | 101/12971 (0.8%) | 1.5 | PO:0000230 | inflorescence meristem |
| 4 | 2.0⋅10-14 | 10/31 (32.3%) | 60.7 | PO:0005849 | primary xylem |
| 5 | 2.3⋅10-14 | 9/21 (42.9%) | 80.6 | PO:0005598 | vascular cambium |
| 6 | 1.8⋅10-13 | 20/371 (5.4%) | 10.1 | PO:0009015 | portion of vascular tissue |
| 7 | 4.9⋅10-13 | 8/18 (44.4%) | 83.6 | PO:0005848 | secondary xylem |
| 8 | 7.4⋅10-13 | 8/19 (42.1%) | 79.2 | PO:0025409 | secondary vascular tissue |
| 9 | 9.6⋅10-13 | 10/47 (21.3%) | 40 | PO:0025275 | procambium |
| 10 | 5.8⋅10-12 | 9/38 (23.7%) | 44.6 | PO:0005597 | cambium |
| 11 | 2.5⋅10-11 | 6/9 (66.7%) | 125.4 | PO:0006202 | interfascicular region |
| 12 | 3.8⋅10-11 | 102/14788 (0.7%) | 1.3 | PO:0009049 | inflorescence |
| 13 | 4.4⋅10-11 | 9/48 (18.8%) | 35.3 | PO:0020145 | lateral meristem |
| 14 | 2.7⋅10-10 | 7/23 (30.4%) | 57.3 | PO:0000272 | protoxylem |
| 15 | 3.7⋅10-8 | 8/70 (11.4%) | 21.5 | PO:0006504 | leaf trichome |
| 16 | 3.7⋅10-8 | 8/70 (11.4%) | 21.5 | PO:0025186 | phyllome trichome |
| 17 | 1.2⋅10-7 | 11/205 (5.4%) | 10.1 | PO:0025205 | shoot system vascular system |
| 18 | 4.9⋅10-7 | 8/98 (8.2%) | 15.4 | PO:0006016 | leaf epidermis |
| 19 | 7.3⋅10-7 | 8/104 (7.7%) | 14.5 | PO:0025157 | phyllome epidermis |
| 20 | 1.9⋅10-6 | 9/164 (5.5%) | 10.3 | PO:0000036 | leaf vascular system |
| 21 | 2.0⋅10-6 | 4/11 (36.4%) | 68.4 | PO:0000290 | tracheary element |
| 22 | 2.9⋅10-6 | 9/174 (5.2%) | 9.7 | PO:0025206 | phyllome vascular system |
| 23 | 3.3⋅10-6 | 16/667 (2.4%) | 4.5 | PO:0000019 | gynoecium primordium |
| 24 | 3.3⋅10-6 | 7/89 (7.9%) | 14.8 | PO:0009067 | filament |
| 25 | 7.9⋅10-6 | 101/16310 (0.6%) | 1.2 | PO:0004010 | meristematic cell |
| 26 | 1.9⋅10-5 | 6/75 (8.0%) | 15 | PO:0000035 | cotyledon vascular system |
| 27 | 2.1⋅10-5 | 101/16512 (0.6%) | 1.2 | PO:0006079 | shoot system meristem |
| 28 | 2.1⋅10-5 | 101/16511 (0.6%) | 1.2 | PO:0020148 | shoot apical meristem |
| 29 | 2.1⋅10-5 | 101/16506 (0.6%) | 1.2 | PO:0000229 | flower meristem |
| 30 | 2.1⋅10-5 | 101/16506 (0.6%) | 1.2 | PO:0008028 | reproductive shoot apical meristem |
| 31 | 2.2⋅10-5 | 101/16522 (0.6%) | 1.1 | PO:0020144 | apical meristem |
| 32 | 2.2⋅10-5 | 4/21 (19.0%) | 35.8 | PO:0004723 | sepal vascular system |
| 33 | 3.2⋅10-5 | 4/23 (17.4%) | 32.7 | PO:0009053 | peduncle |
| 34 | 4.4⋅10-5 | 4/25 (16.0%) | 30.1 | PO:0000054 | petal vascular system |
| 35 | 5.8⋅10-5 | 8/201 (4.0%) | 7.5 | PO:0000282 | trichome |
| 36 | 6.8⋅10-5 | 102/17205 (0.6%) | 1.1 | PO:0009046 | flower |
| 37 | 8.9⋅10-5 | 102/17256 (0.6%) | 1.1 | PO:0025082 | reproductive shoot system |
| 38 | 1.8⋅10-4 | 3/13 (23.1%) | 43.4 | PO:0000033 | fruit valve |
| 39 | 2.1⋅10-4 | 4/38 (10.5%) | 19.8 | PO:0005017 | flower vascular system |
| 40 | 2.7⋅10-4 | 3/15 (20.0%) | 37.6 | PO:0025228 | valve |
| 41 | 4.7⋅10-4 | 4/47 (8.5%) | 16 | PO:0025198 | shoot axis stele |
| 42 | 2.4⋅10-3 | 2/7 (28.6%) | 53.7 | PO:0025417 | xylem vessel |
| 43 | 2.6⋅10-3 | 101/17450 (0.6%) | 1.1 | PO:0009002 | plant cell |
| 44 | 2.6⋅10-3 | 101/17450 (0.6%) | 1.1 | PO:0025606 | native plant cell |
| 45 | 2.9⋅10-3 | 2/8 (25.0%) | 47 | PO:0000372 | metaxylem |
| 46 | 6.1⋅10-3 | 5/160 (3.1%) | 5.9 | PO:0003011 | root vascular system |
| 47 | 6.5⋅10-3 | 7/327 (2.1%) | 4 | PO:0000014 | rosette leaf |
| 48 | 6.5⋅10-3 | 7/327 (2.1%) | 4 | PO:0025615 | rosette |
| 49 | 6.5⋅10-3 | 3/46 (6.5%) | 12.3 | PO:0000039 | shoot axis vascular system |
| 50 | 7.2⋅10-3 | 2/13 (15.4%) | 28.9 | PO:0008015 | hypocotyl vascular system |
| 51 | 7.6⋅10-3 | 93/15419 (0.6%) | 1.1 | PO:0009047 | stem |
| 52 | 9.4⋅10-3 | 99/17080 (0.6%) | 1.1 | PO:0025004 | plant axis |
| 53 | 10.0⋅10-3 | 6/269 (2.2%) | 4.2 | PO:0025594 | ground meristem |
| 54 | 10.0⋅10-3 | 102/18134 (0.6%) | 1.1 | PO:0009013 | portion of meristem tissue |
| 55 | 1.3⋅10-2 | 96/16347 (0.6%) | 1.1 | PO:0025029 | shoot axis |
| 56 | 1.8⋅10-2 | 2/22 (9.1%) | 17.1 | PO:0008011 | plant embryo vascular system |
| 57 | 1.9⋅10-2 | 6/311 (1.9%) | 3.6 | PO:0025059 | portion of ground tissue |
| 58 | 2.1⋅10-2 | 86/14136 (0.6%) | 1.1 | PO:0005005 | shoot axis internode |
| 59 | 2.1⋅10-2 | 86/14136 (0.6%) | 1.1 | PO:0020100 | hypocotyl |
| 60 | 2.1⋅10-2 | 86/14136 (0.6%) | 1.1 | PO:0020142 | stem internode |
| 61 | 2.7⋅10-2 | 5/243 (2.1%) | 3.9 | PO:0020124 | root stele |
| 62 | 2.7⋅10-2 | 90/15128 (0.6%) | 1.1 | PO:0025498 | cardinal part of multi-tissue plant structure |
| 63 | 2.7⋅10-2 | 90/15127 (0.6%) | 1.1 | PO:0025001 | cardinal organ part |
| 64 | 3.3⋅10-2 | 89/14966 (0.6%) | 1.1 | PO:0025025 | root system |
| 65 | 3.3⋅10-2 | 102/18389 (0.6%) | 1 | PO:0009006 | shoot system |
| 66 | 3.3⋅10-2 | 5/261 (1.9%) | 3.6 | PO:0025197 | stele |
| 67 | 3.7⋅10-2 | 100/17741 (0.6%) | 1.1 | PO:0025127 | primordium |
| 68 | 3.9⋅10-2 | 102/18422 (0.6%) | 1 | PO:0009008 | plant organ |
| 69 | 4.0⋅10-2 | 8/611 (1.3%) | 2.5 | PO:0009001 | fruit |
| 70 | 4.1⋅10-2 | 88/14844 (0.6%) | 1.1 | PO:0005029 | root primordium |
| 71 | 4.1⋅10-2 | 88/14844 (0.6%) | 1.1 | PO:0025433 | root anlagen |
| 72 | 4.1⋅10-2 | 2/38 (5.3%) | 9.9 | PO:0003015 | primary root differentiation zone |
| 73 | 4.2⋅10-2 | 102/18447 (0.6%) | 1 | PO:0025496 | multi-tissue plant structure |
| 74 | 4.7⋅10-2 | 88/14908 (0.6%) | 1.1 | PO:0009005 | root |
| 75 | 4.9⋅10-2 | 2/43 (4.7%) | 8.7 | PO:0020135 | root differentiation zone |
| 76 | 4.9⋅10-2 | 2/43 (4.7%) | 8.7 | PO:0025119 | plant axis differentiation zone |
| Plant Ontology: Plant Structure Development Stage | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Accession | Plant Structure Development Stage |
| 1 | 1.1⋅10-8 | 102/14788 (0.7%) | 1.2 | PO:0001083 | inflorescence development stage |
| 2 | 5.8⋅10-5 | 10/268 (3.7%) | 6.7 | PO:0007131 | seedling development stage |
| 3 | 1.7⋅10-3 | 101/16437 (0.6%) | 1.1 | PO:0007604 | corolla development stage |
| 4 | 1.7⋅10-3 | 101/16437 (0.6%) | 1.1 | PO:0007611 | petal differentiation and expansion stage |
| 5 | 6.2⋅10-3 | 101/16738 (0.6%) | 1.1 | PO:0007600 | floral organ differentiation stage |
| 6 | 6.2⋅10-3 | 101/16738 (0.6%) | 1.1 | PO:0025578 | collective phyllome structure development stage |
| 7 | 2.3⋅10-2 | 102/17424 (0.6%) | 1.1 | PO:0025338 | collective plant organ structure development stage |
| 8 | 2.3⋅10-2 | 102/17424 (0.6%) | 1.1 | PO:0025527 | shoot system development stage |
| 9 | 2.3⋅10-2 | 102/17391 (0.6%) | 1.1 | PO:0025530 | reproductive shoot system development stage |
| 10 | 4.1⋅10-2 | 101/17205 (0.6%) | 1.1 | PO:0007615 | flower development stage |
| 11 | 4.1⋅10-2 | 101/17205 (0.6%) | 1.1 | PO:0025585 | floral organ formation stage |
| 12 | 4.7⋅10-2 | 101/17247 (0.6%) | 1.1 | PO:0025339 | plant organ development stage |
| WikiPathways | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | WikiPathways | Description |
| KEGG | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Entry | Name |
| 1 | 2.6⋅10-2 | 2/122 (1.6%) | 13.1 | ath00520 | Amino sugar and nucleotide sugar metabolism - Arabidopsis thaliana (thale cress) |
| 2 | 3.0⋅10-2 | 2/187 (1.1%) | 8.6 | ath00500 | Starch and sucrose metabolism - Arabidopsis thaliana (thale cress) |
| AraCyc | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | PathwayID | Pathway Name |
| 1 | 2.9⋅10-4 | 3/23 (13.0%) | 27.1 | PWY-1001 | cellulose biosynthesis |
| 2 | 2.3⋅10-3 | 3/58 (5.2%) | 10.7 | PWY-1081 | homogalacturonan degradation |
| AtRegNet | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| 1 | 2.8⋅10-27 | 17/40 (42.5%) | 88 | VND7 | vascular related NAC-domain protein 7 | vascular related NAC-domain protein 7 |
| 2 | 8.4⋅10-21 | 12/22 (54.5%) | 112.9 | ILR3 | iaa-leucine resistant3 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 3 | 6.8⋅10-18 | 12/35 (34.3%) | 71 | NAC012 | NAC domain containing protein 12 | NAC domain containing protein 12 |
| 4 | 1.1⋅10-17 | 11/26 (42.3%) | 87.6 | AT2G44730 | AT2G44730 | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein |
| 5 | 5.3⋅10-16 | 10/24 (41.7%) | 86.3 | AT1G61730 | AT1G61730 | DNA-binding storekeeper protein-related transcriptional regulator |
| 6 | 7.4⋅10-16 | 10/25 (40.0%) | 82.8 | ATE2F2 | ATE2F2 | winged-helix DNA-binding transcription factor family protein |
| 7 | 7.5⋅10-13 | 7/11 (63.6%) | 131.8 | ARF9 | auxin response factor 9 | auxin response factor 9 |
| 8 | 9.2⋅10-11 | 6/10 (60.0%) | 124.2 | AT2G21230 | AT2G21230 | Basic-leucine zipper (bZIP) transcription factor family protein |
| 9 | 1.8⋅10-10 | 6/11 (54.5%) | 112.9 | ERF9 | erf domain protein 9 | erf domain protein 9 |
| 10 | 2.2⋅10-10 | 64/6320 (1.0%) | 2.1 | NAC076 | NAC domain containing protein 76 | NAC domain containing protein 76 |
| 11 | 5.1⋅10-10 | 73/8185 (0.9%) | 1.8 | SMB | SOMBRERO | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 11 | 5.1⋅10-10 | 73/8185 (0.9%) | 1.8 | smB | small nuclear ribonucleoprotein associated protein B | small nuclear ribonucleoprotein associated protein B |
| 12 | 6.6⋅10-10 | 65/6675 (1.0%) | 2 | NAC101 | NAC-domain protein 101 | NAC-domain protein 101 |
| 13 | 2.1⋅10-9 | 6/16 (37.5%) | 77.7 | NAC102 | NAC domain containing protein 102 | NAC domain containing protein 102 |
| 14 | 6.9⋅10-9 | 5/9 (55.6%) | 115 | ASIL1 | 6B-interacting protein 1-like 1 | 6B-interacting protein 1-like 1 |
| 15 | 3.0⋅10-8 | 47/4155 (1.1%) | 2.3 | VND1 | vascular related NAC-domain protein 1 | vascular related NAC-domain protein 1 |
| 16 | 3.7⋅10-8 | 5/12 (41.7%) | 86.3 | HB30 | homeobox protein 30 | homeobox protein 30 |
| 17 | 1.4⋅10-7 | 4/6 (66.7%) | 138 | DREB2A | DRE-binding protein 2A | DRE-binding protein 2A |
| 18 | 1.4⋅10-7 | 4/6 (66.7%) | 138 | AT5G51190 | AT5G51190 | Integrase-type DNA-binding superfamily protein |
| 19 | 1.5⋅10-7 | 59/6437 (0.9%) | 1.9 | NAC045 | NAC domain containing protein 45 | NAC domain containing protein 45 |
| 20 | 2.2⋅10-7 | 66/7834 (0.8%) | 1.7 | NAC071 | NAC domain containing protein 71 | NAC domain containing protein 71 |
| 21 | 5.5⋅10-7 | 4/8 (50.0%) | 103.5 | ZFP7 | zinc finger protein 7 | zinc finger protein 7 |
| 22 | 1.2⋅10-6 | 56/6250 (0.9%) | 1.9 | NST1 | NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 23 | 1.6⋅10-6 | 3/3 (100.0%) | 207.1 | GRF3 | growth-regulating factor 3 | growth-regulating factor 3 |
| 23 | 1.6⋅10-6 | 3/3 (100.0%) | 207.1 | GRF3 | general regulatory factor 3 | general regulatory factor 3 |
| 24 | 6.9⋅10-6 | 5/33 (15.2%) | 31.4 | MYB46 | myb domain protein 46 | myb domain protein 46 |
| 25 | 7.5⋅10-6 | 48/5170 (0.9%) | 1.9 | NAC050 | NAC domain containing protein 50 | NAC domain containing protein 50 |
| 26 | 1.4⋅10-5 | 3/5 (60.0%) | 124.2 | NAC066 | NAC domain protein 66 | NAC domain protein 66 |
| 27 | 2.6⋅10-5 | 3/6 (50.0%) | 103.5 | DREB26 | dehydration response element-binding protein 26 | Integrase-type DNA-binding superfamily protein |
| 28 | 3.1⋅10-5 | 43/4583 (0.9%) | 1.9 | NAC028 | NAC domain containing protein 28 | NAC domain containing protein 28 |
| 29 | 4.1⋅10-5 | 38/3819 (1.0%) | 2.1 | ATHB-15 | ATHB-15 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 30 | 4.1⋅10-5 | 3/7 (42.9%) | 88.7 | GRF1 | general regulatory factor 1 | general regulatory factor 1 |
| 30 | 4.1⋅10-5 | 3/7 (42.9%) | 88.7 | GRF1 | growth-regulating factor 1 | growth-regulating factor 1 |
| 31 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | NAC007 | NAC 007 | NAC 007 |
| 32 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | AT1G76510 | AT1G76510 | ARID/BRIGHT DNA-binding domain-containing protein |
| 33 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | AT5G03510 | AT5G03510 | C2H2-type zinc finger family protein |
| 34 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | GATA12 | GATA transcription factor 12 | GATA transcription factor 12 |
| 35 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | AT5G61590 | AT5G61590 | Integrase-type DNA-binding superfamily protein |
| 36 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | ERF104 | ethylene response factor 104 | ethylene response factor 104 |
| 37 | 1.9⋅10-4 | 2/2 (100.0%) | 207.1 | CRF8 | cytokinin response factor 8 | Integrase-type DNA-binding superfamily protein |
| 38 | 1.9⋅10-4 | 45/5290 (0.9%) | 1.8 | MYB73 | myb domain protein 73 | myb domain protein 73 |
| 39 | 1.9⋅10-4 | 44/5108 (0.9%) | 1.8 | PHV | PHAVOLUTA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 40 | 2.6⋅10-4 | 51/6464 (0.8%) | 1.6 | NAC083 | NAC domain containing protein 83 | NAC domain containing protein 83 |
| 41 | 3.4⋅10-4 | 42/4915 (0.9%) | 1.8 | MYB107 | myb domain protein 107 | myb domain protein 107 |
| 42 | 4.3⋅10-4 | 21/1705 (1.2%) | 2.6 | DDF1 | DWARF AND DELAYED FLOWERING 1 | Integrase-type DNA-binding superfamily protein |
| 43 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | NF-YB10 | nuclear factor Y, subunit B10 | nuclear factor Y, subunit B10 |
| 44 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | ERF6 | ethylene responsive element binding factor 6 | ethylene responsive element binding factor 6 |
| 45 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | AT1G01260 | AT1G01260 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 46 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | HB21 | homeobox protein 21 | homeobox protein 21 |
| 46 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | HB21 | homeobox protein 21 | homeobox protein 21 |
| 47 | 4.8⋅10-4 | 2/3 (66.7%) | 138 | GBF3 | G-box binding factor 3 | G-box binding factor 3 |
| 48 | 7.0⋅10-4 | 64/9292 (0.7%) | 1.4 | ATHB13 | ATHB13 | Homeobox-leucine zipper protein family |
| 49 | 7.3⋅10-4 | 38/4417 (0.9%) | 1.8 | NAC020 | NAC domain containing protein 20 | NAC domain containing protein 20 |
| 50 | 8.2⋅10-4 | 2/4 (50.0%) | 103.5 | AT5G61890 | AT5G61890 | Integrase-type DNA-binding superfamily protein |
| 51 | 8.2⋅10-4 | 2/4 (50.0%) | 103.5 | KNAT7 | KNOTTED-like homeobox of Arabidopsis thaliana 7 | homeobox knotted-like protein |
| 52 | 8.2⋅10-4 | 2/4 (50.0%) | 103.5 | AT1G64620 | AT1G64620 | Dof-type zinc finger DNA-binding family protein |
| 53 | 8.2⋅10-4 | 2/4 (50.0%) | 103.5 | ABF4 | ABRE binding factor 4 | ABRE binding factor 4 |
| 54 | 8.2⋅10-4 | 68/10208 (0.7%) | 1.4 | NAC010 | NAC domain containing protein 10 | NAC domain containing protein 10 |
| 55 | 8.2⋅10-4 | 35/3954 (0.9%) | 1.8 | NAC004 | NAC domain containing protein 4 | NAC domain containing protein 4 |
| 56 | 9.7⋅10-4 | 68/10261 (0.7%) | 1.4 | MYB67 | myb domain protein 67 | myb domain protein 67 |
| 57 | 1.1⋅10-3 | 34/3860 (0.9%) | 1.8 | CUC3 | CUP SHAPED COTYLEDON3 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 58 | 1.2⋅10-3 | 46/5976 (0.8%) | 1.6 | NTM1 | NAC with transmembrane motif1 | NAC with transmembrane motif1 |
| 59 | 1.5⋅10-3 | 56/7942 (0.7%) | 1.5 | BBX31 | B-box domain protein 31 | B-box type zinc finger family protein |
| 60 | 1.6⋅10-3 | 58/8355 (0.7%) | 1.4 | HB33 | homeobox protein 33 | homeobox protein 33 |
| 61 | 1.6⋅10-3 | 38/4622 (0.8%) | 1.7 | NAC005 | NAC domain containing protein 5 | NAC domain containing protein 5 |
| 62 | 1.6⋅10-3 | 30/3285 (0.9%) | 1.9 | NAC13 | NAC domain protein 13 | NAC domain protein 13 |
| 63 | 2.1⋅10-3 | 51/7078 (0.7%) | 1.5 | NAC058 | NAC domain containing protein 58 | NAC domain containing protein 58 |
| 64 | 2.1⋅10-3 | 41/5228 (0.8%) | 1.6 | NAC2 | NAC domain containing protein 2 | NAC domain containing protein 2 |
| 64 | 2.1⋅10-3 | 41/5228 (0.8%) | 1.6 | NAC2 | NAC domain containing protein 2 | NAC domain containing protein 2 |
| 65 | 2.1⋅10-3 | 33/3846 (0.9%) | 1.8 | NAC038 | NAC domain containing protein 38 | NAC domain containing protein 38 |
| 66 | 2.2⋅10-3 | 3/31 (9.7%) | 20 | MYB83 | myb domain protein 83 | myb domain protein 83 |
| 67 | 3.2⋅10-3 | 7/302 (2.3%) | 4.8 | AIL6 | AINTEGUMENTA-like 6 | AINTEGUMENTA-like 6 |
| 68 | 3.5⋅10-3 | 74/12005 (0.6%) | 1.3 | MYB77 | myb domain protein 77 | myb domain protein 77 |
| 69 | 3.5⋅10-3 | 30/3471 (0.9%) | 1.8 | MYB98 | myb domain protein 98 | myb domain protein 98 |
| 70 | 3.8⋅10-3 | 2/9 (22.2%) | 46 | BES1 | BRI1-EMS-SUPPRESSOR 1 | Brassinosteroid signaling positive regulator (BZR1) family protein |
| 71 | 6.4⋅10-3 | 7/343 (2.0%) | 4.2 | AT1G76880 | AT1G76880 | Duplicated homeodomain-like superfamily protein |
| 72 | 7.5⋅10-3 | 53/7862 (0.7%) | 1.4 | NAC016 | NAC domain containing protein 16 | NAC domain containing protein 16 |
| 73 | 8.4⋅10-3 | 52/7704 (0.7%) | 1.4 | OBP3 | OBF-binding protein 3 | OBF-binding protein 3 |
| 74 | 8.4⋅10-3 | 63/9933 (0.6%) | 1.3 | HB23 | homeobox protein 23 | homeobox protein 23 |
| 75 | 9.8⋅10-3 | 44/6222 (0.7%) | 1.5 | MYB70 | myb domain protein 70 | myb domain protein 70 |
| 76 | 1.1⋅10-2 | 18/1823 (1.0%) | 2 | NAC6 | NAC domain containing protein 6 | NAC domain containing protein 6 |
| 77 | 1.1⋅10-2 | 62/9834 (0.6%) | 1.3 | HB5 | homeobox protein 5 | homeobox protein 5 |
| 78 | 1.6⋅10-2 | 71/11876 (0.6%) | 1.2 | AT5G02460 | AT5G02460 | Dof-type zinc finger DNA-binding family protein |
| 79 | 2.0⋅10-2 | 45/6645 (0.7%) | 1.4 | DOF1 | DOF zinc finger protein 1 | DOF zinc finger protein 1 |
| 80 | 2.1⋅10-2 | 17/1785 (1.0%) | 2 | MYB63 | myb domain protein 63 | myb domain protein 63 |
| 81 | 2.1⋅10-2 | 16/1637 (1.0%) | 2 | RAP2.9 | related to AP2 9 | related to AP2 9 |
| 82 | 2.2⋅10-2 | 38/5374 (0.7%) | 1.5 | CRC | CRABS CLAW | Plant-specific transcription factor YABBY family protein |
| 83 | 2.4⋅10-2 | 63/10329 (0.6%) | 1.3 | AT2G28810 | AT2G28810 | Dof-type zinc finger DNA-binding family protein |
| 84 | 2.5⋅10-2 | 19/2141 (0.9%) | 1.8 | DEAR3 | DREB and EAR motif protein 3 | DREB and EAR motif protein 3 |
| 85 | 2.7⋅10-2 | 15/1542 (1.0%) | 2 | ANAC087 | Arabidopsis NAC domain containing protein 87 | NAC domain containing protein 87 |
| 86 | 3.4⋅10-2 | 68/11544 (0.6%) | 1.2 | HCA2 | HIGH CAMBIAL ACTIVITY2 | Dof-type zinc finger DNA-binding family protein |
| 87 | 4.0⋅10-2 | 54/8698 (0.6%) | 1.3 | DOF2.4 | DNA binding with one finger 2.4 | DNA binding with one finger 2.4 |
| 88 | 4.2⋅10-2 | 8/630 (1.3%) | 2.6 | TCP20 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 |
| 89 | 4.2⋅10-2 | 42/6370 (0.7%) | 1.4 | AT4G26030 | AT4G26030 | C2H2-like zinc finger protein |
| 90 | 4.3⋅10-2 | 35/5063 (0.7%) | 1.4 | MYB80 | MYB80 | myb domain protein 103 |
| 91 | 4.4⋅10-2 | 22/2777 (0.8%) | 1.6 | NAC057 | NAC domain containing protein 57 | NAC domain containing protein 57 |
| 92 | 4.7⋅10-2 | 36/5287 (0.7%) | 1.4 | HB53 | homeobox 53 | homeobox 53 |
| Plant Cistrome Database | ||||||
|---|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | TF Symbol | TF Name | TF Description |
| 1 | 9.2⋅10-9 | 65/6686 (1.0%) | 2 | NAC101 | NAC-domain protein 101 | NAC-domain protein 101 |
| 2 | 2.3⋅10-8 | 85/11231 (0.8%) | 1.6 | SMB | SOMBRERO | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 2 | 2.3⋅10-8 | 85/11231 (0.8%) | 1.6 | smB | small nuclear ribonucleoprotein associated protein B | small nuclear ribonucleoprotein associated protein B |
| 3 | 3.6⋅10-8 | 59/5982 (1.0%) | 2 | NAC096 | NAC domain containing protein 96 | NAC domain containing protein 96 |
| 4 | 3.6⋅10-8 | 67/7465 (0.9%) | 1.9 | NAC076 | NAC domain containing protein 76 | NAC domain containing protein 76 |
| 5 | 9.9⋅10-8 | 47/4155 (1.1%) | 2.3 | VND1 | vascular related NAC-domain protein 1 | vascular related NAC-domain protein 1 |
| 6 | 8.3⋅10-7 | 68/8242 (0.8%) | 1.7 | NAC071 | NAC domain containing protein 71 | NAC domain containing protein 71 |
| 7 | 8.8⋅10-7 | 64/7487 (0.9%) | 1.8 | NST1 | NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 8 | 1.1⋅10-6 | 59/6598 (0.9%) | 1.9 | NAC045 | NAC domain containing protein 45 | NAC domain containing protein 45 |
| 9 | 2.9⋅10-6 | 54/5873 (0.9%) | 1.9 | NAC050 | NAC domain containing protein 50 | NAC domain containing protein 50 |
| 10 | 1.2⋅10-5 | 53/5963 (0.9%) | 1.8 | NAC007 | NAC 007 | NAC 007 |
| 11 | 1.2⋅10-5 | 62/7634 (0.8%) | 1.7 | NAC070 | NAC domain containing protein 70 | NAC domain containing protein 70 |
| 12 | 5.2⋅10-5 | 67/8963 (0.7%) | 1.5 | MYB58 | myb domain protein 58 | myb domain protein 58 |
| 13 | 7.5⋅10-5 | 43/4583 (0.9%) | 1.9 | NAC028 | NAC domain containing protein 28 | NAC domain containing protein 28 |
| 14 | 9.3⋅10-5 | 38/3819 (1.0%) | 2.1 | ATHB-15 | ATHB-15 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 15 | 4.7⋅10-4 | 44/5108 (0.9%) | 1.8 | PHV | PHAVOLUTA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 16 | 4.9⋅10-4 | 54/6943 (0.8%) | 1.6 | NAC2 | NAC domain containing protein 2 | NAC domain containing protein 2 |
| 16 | 4.9⋅10-4 | 54/6943 (0.8%) | 1.6 | NAC2 | NAC domain containing protein 2 | NAC domain containing protein 2 |
| 17 | 1.1⋅10-3 | 64/9114 (0.7%) | 1.5 | HB33 | homeobox protein 33 | homeobox protein 33 |
| 18 | 1.1⋅10-3 | 26/2399 (1.1%) | 2.2 | NAC105 | NAC domain containing protein 105 | NAC domain containing protein 105 |
| 19 | 1.3⋅10-3 | 53/7005 (0.8%) | 1.6 | NAC083 | NAC domain containing protein 83 | NAC domain containing protein 83 |
| 20 | 1.8⋅10-3 | 64/9292 (0.7%) | 1.4 | ATHB13 | ATHB13 | Homeobox-leucine zipper protein family |
| 21 | 1.9⋅10-3 | 38/4417 (0.9%) | 1.8 | NAC020 | NAC domain containing protein 20 | NAC domain containing protein 20 |
| 22 | 2.7⋅10-3 | 68/10261 (0.7%) | 1.4 | MYB67 | myb domain protein 67 | myb domain protein 67 |
| 23 | 3.0⋅10-3 | 32/3545 (0.9%) | 1.9 | NTL8 | NTM1-like 8 | NTM1-like 8 |
| 24 | 3.0⋅10-3 | 44/5605 (0.8%) | 1.6 | MYB107 | myb domain protein 107 | myb domain protein 107 |
| 25 | 3.0⋅10-3 | 34/3860 (0.9%) | 1.8 | CUC3 | CUP SHAPED COTYLEDON3 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| 26 | 3.6⋅10-3 | 71/11073 (0.6%) | 1.3 | NAC073 | NAC domain containing protein 73 | NAC domain containing protein 73 |
| 27 | 3.6⋅10-3 | 38/4622 (0.8%) | 1.7 | NAC005 | NAC domain containing protein 5 | NAC domain containing protein 5 |
| 28 | 3.6⋅10-3 | 41/5147 (0.8%) | 1.7 | NAC004 | NAC domain containing protein 4 | NAC domain containing protein 4 |
| 29 | 3.6⋅10-3 | 30/3285 (0.9%) | 1.9 | NAC13 | NAC domain protein 13 | NAC domain protein 13 |
| 30 | 3.6⋅10-3 | 56/7941 (0.7%) | 1.5 | BBX31 | B-box domain protein 31 | B-box type zinc finger family protein |
| 31 | 4.6⋅10-3 | 56/8038 (0.7%) | 1.4 | NTM1 | NAC with transmembrane motif1 | NAC with transmembrane motif1 |
| 32 | 4.7⋅10-3 | 33/3846 (0.9%) | 1.8 | NAC038 | NAC domain containing protein 38 | NAC domain containing protein 38 |
| 33 | 6.3⋅10-3 | 52/7359 (0.7%) | 1.5 | NAC058 | NAC domain containing protein 58 | NAC domain containing protein 58 |
| 34 | 7.8⋅10-3 | 30/3471 (0.9%) | 1.8 | MYB98 | myb domain protein 98 | myb domain protein 98 |
| 35 | 7.8⋅10-3 | 74/12005 (0.6%) | 1.3 | MYB77 | myb domain protein 77 | myb domain protein 77 |
| 36 | 8.9⋅10-3 | 30/3505 (0.9%) | 1.8 | HB20 | homeobox protein 20 | homeobox protein 20 |
| 37 | 1.1⋅10-2 | 31/3733 (0.8%) | 1.7 | NAC062 | NAC domain containing protein 62 | NAC domain containing protein 62 |
| 38 | 1.2⋅10-2 | 30/3574 (0.8%) | 1.7 | MYB93 | myb domain protein 93 | myb domain protein 93 |
| 39 | 1.2⋅10-2 | 50/7195 (0.7%) | 1.4 | NAC046 | NAC domain containing protein 46 | NAC domain containing protein 46 |
| 40 | 1.3⋅10-2 | 33/4128 (0.8%) | 1.7 | NAC053 | NAC domain containing protein 53 | NAC domain containing protein 53 |
| 41 | 1.5⋅10-2 | 53/7862 (0.7%) | 1.4 | NAC016 | NAC domain containing protein 16 | NAC domain containing protein 16 |
| 42 | 1.8⋅10-2 | 39/5279 (0.7%) | 1.5 | MYB73 | myb domain protein 73 | myb domain protein 73 |
| 43 | 1.9⋅10-2 | 44/6222 (0.7%) | 1.5 | MYB70 | myb domain protein 70 | myb domain protein 70 |
| 44 | 2.0⋅10-2 | 72/11955 (0.6%) | 1.2 | NAC010 | NAC domain containing protein 10 | NAC domain containing protein 10 |
| 45 | 2.0⋅10-2 | 44/6250 (0.7%) | 1.5 | AT5G47660 | AT5G47660 | Homeodomain-like superfamily protein |
| 46 | 2.7⋅10-2 | 64/10337 (0.6%) | 1.3 | HB23 | homeobox protein 23 | homeobox protein 23 |
| 47 | 2.9⋅10-2 | 23/2666 (0.9%) | 1.8 | HB18 | homeobox-leucine zipper protein 18 | homeobox-leucine zipper protein 18 |
| 48 | 3.3⋅10-2 | 18/1904 (0.9%) | 2 | NAC080 | NAC domain containing protein 80 | NAC domain containing protein 80 |
| 49 | 3.3⋅10-2 | 53/8178 (0.6%) | 1.3 | MYBR1 | myb domain protein r1 | myb domain protein r1 |
| 50 | 3.3⋅10-2 | 74/12606 (0.6%) | 1.2 | AT5G02460 | AT5G02460 | Dof-type zinc finger DNA-binding family protein |
| 51 | 3.4⋅10-2 | 45/6645 (0.7%) | 1.4 | DOF1 | DOF zinc finger protein 1 | DOF zinc finger protein 1 |
| 52 | 3.4⋅10-2 | 41/5884 (0.7%) | 1.4 | GT2 | GT2 | Duplicated homeodomain-like superfamily protein |
| 53 | 3.4⋅10-2 | 26/3225 (0.8%) | 1.7 | NAC057 | NAC domain containing protein 57 | NAC domain containing protein 57 |
| 54 | 3.5⋅10-2 | 16/1637 (1.0%) | 2 | RAP2.9 | related to AP2 9 | related to AP2 9 |
| 55 | 3.5⋅10-2 | 63/10291 (0.6%) | 1.3 | HB25 | homeobox protein 25 | homeobox protein 25 |
| 56 | 3.6⋅10-2 | 38/5374 (0.7%) | 1.5 | CRC | CRABS CLAW | Plant-specific transcription factor YABBY family protein |
| 57 | 4.1⋅10-2 | 59/9534 (0.6%) | 1.3 | DOF2.4 | DNA binding with one finger 2.4 | DNA binding with one finger 2.4 |
| 58 | 4.1⋅10-2 | 68/11427 (0.6%) | 1.2 | HB40 | homeobox protein 40 | homeobox protein 40 |
| 59 | 4.2⋅10-2 | 54/8535 (0.6%) | 1.3 | OBP3 | OBF-binding protein 3 | OBF-binding protein 3 |
| 60 | 4.2⋅10-2 | 64/10589 (0.6%) | 1.3 | DOF6 | DOF transcription factor 6 | Dof-type zinc finger DNA-binding family protein |
| 61 | 4.3⋅10-2 | 65/10819 (0.6%) | 1.2 | AT3G52440 | AT3G52440 | Dof-type zinc finger DNA-binding family protein |
| 62 | 4.3⋅10-2 | 24/2980 (0.8%) | 1.7 | MYB56 | myb domain protein 56 | myb domain protein 56 |
| 63 | 4.4⋅10-2 | 46/6990 (0.7%) | 1.4 | HB24 | homeobox protein 24 | homeobox protein 24 |
| 64 | 5.0⋅10-2 | 68/11544 (0.6%) | 1.2 | HCA2 | HIGH CAMBIAL ACTIVITY2 | Dof-type zinc finger DNA-binding family protein |
| 65 | 5.0⋅10-2 | 51/8024 (0.6%) | 1.3 | RAP2.11 | related to AP2 11 | related to AP2 11 |
| Pfam | |||||
|---|---|---|---|---|---|
| Rank | Pvalue | Hits | Over-representation | Family | Summary |
| 1 | 4.6⋅10-7 | 6/39 (15.4%) | 29.2 | Cu-oxidase | Multicopper oxidase |
| 2 | 4.6⋅10-7 | 6/39 (15.4%) | 29.2 | Cu-oxidase_2 | Multicopper oxidase |
| 3 | 4.6⋅10-7 | 6/37 (16.2%) | 30.8 | Cu-oxidase_3 | Multicopper oxidase |
| 4 | 9.5⋅10-6 | 3/5 (60.0%) | 113.8 | Glyco_hydro_10 | Glycosyl hydrolase family 10 |
| 5 | 6.3⋅10-5 | 3/9 (33.3%) | 63.2 | Polysacc_synt_4 | Polysaccharide biosynthesis |
| 6 | 6.4⋅10-5 | 3/10 (30.0%) | 56.9 | PBD | P21-Rho-binding domain |
| 7 | 6.4⋅10-5 | 3/10 (30.0%) | 56.9 | zf-UDP | Zinc-binding RING-finger |
| 8 | 2.8⋅10-4 | 2/3 (66.7%) | 126.5 | CBM_4_9 | Carbohydrate binding domain |
| 9 | 3.7⋅10-4 | 5/92 (5.4%) | 10.3 | NAM | No apical meristem (NAM) protein |
| 10 | 6.3⋅10-4 | 3/23 (13.0%) | 24.7 | Cellulose_synt | Cellulose synthase |
| 11 | 10.0⋅10-4 | 2/6 (33.3%) | 63.2 | Transcrip_act | Transcriptional activator |
| 12 | 1.3⋅10-3 | 3/31 (9.7%) | 18.4 | Cu_bind_like | Plastocyanin-like domain |
| 13 | 2.0⋅10-3 | 2/9 (22.2%) | 42.2 | DUF620 | Protein of unknown function (DUF620) |
| 14 | 2.0⋅10-3 | 3/38 (7.9%) | 15 | Glyco_transf_8 | Glycosyl transferase family 8 |
| 15 | 3.7⋅10-3 | 2/13 (15.4%) | 29.2 | DUF1218 | Protein of unknown function (DUF1218) |
| 16 | 3.9⋅10-3 | 3/50 (6.0%) | 11.4 | Glyco_hydro_28 | Glycosyl hydrolases family 28 |
| 17 | 5.0⋅10-3 | 2/16 (12.5%) | 23.7 | Fasciclin | Fasciclin domain |
| 18 | 1.3⋅10-2 | 2/27 (7.4%) | 14.1 | Inhibitor_I29 | Cathepsin propeptide inhibitor domain (I29) |
| 19 | 1.9⋅10-2 | 2/33 (6.1%) | 11.5 | Peptidase_C1 | Papain family cysteine protease |
| 20 | 2.0⋅10-2 | 2/35 (5.7%) | 10.8 | PMR5N | PMR5 N terminal Domain |
| 21 | 2.0⋅10-2 | 2/36 (5.6%) | 10.5 | PC-Esterase | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p |
| 22 | 2.4⋅10-2 | 2/41 (4.9%) | 9.3 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| 23 | 3.5⋅10-2 | 2/51 (3.9%) | 7.4 | IQ | IQ calmodulin-binding motif |
| white Module: 102 genes | ||||
|---|---|---|---|---|
| Probeset | Symbol | Name | Description | Average Ranking |
| AT5G17420_at | IRX3 | IRREGULAR XYLEM 3 | Cellulose synthase family protein | 16.817825241375 |
| AT5G54690_at | GAUT12 | galacturonosyltransferase 12 | galacturonosyltransferase 12 | 17.415019064018 |
| AT5G15630_at | IRX6 | IRREGULAR XYLEM 6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | 18.827341876268 |
| AT5G44030_at | CESA4 | cellulose synthase A4 | cellulose synthase A4 | 18.856241544185 |
| AT3G16920_at | CTL2 | chitinase-like protein 2 | chitinase-like protein | 19.567252552119 |
| AT3G18660_at | PGSIP1 | plant glycogenin-like starch initiation protein 1 | plant glycogenin-like starch initiation protein 1 | 21.171184121518 |
| AT2G37090_at | IRX9 | IRREGULAR XYLEM 9 | Nucleotide-diphospho-sugar transferases superfamily protein | 21.552620149437 |
| AT2G38080_at | IRX12 | IRREGULAR XYLEM 12 | Laccase/Diphenol oxidase family protein | 22.293520539942 |
| AT4G18780_at | IRX1 | IRREGULAR XYLEM 1 | cellulose synthase family protein | 22.464147346412 |
| AT5G60720_at | AT5G60720 | electron transporter, putative (Protein of unknown function, DUF547) | 22.770167117643 | |
| AT5G03170_at | FLA11 | FASCICLIN-like arabinogalactan-protein 11 | FASCICLIN-like arabinogalactan-protein 11 | 22.956035529795 |
| AT1G27440_at | GUT2 | Exostosin family protein | 25.022559728799 | |
| AT5G60020_at | LAC17 | laccase 17 | laccase 17 | 25.631036298506 |
| AT4G28500_at | NAC073 | NAC domain containing protein 73 | NAC domain containing protein 73 | 26.685082405756 |
| AT4G27435_at | AT4G27435 | fiber (DUF1218) | 28.244476815694 | |
| AT5G01360_at | TBL3 | TRICHOME BIREFRINGENCE-LIKE 3 | trichome birefringence-like protein (DUF828) | 29.075837125638 |
| AT5G40020_at | AT5G40020 | Pathogenesis-related thaumatin superfamily protein | 30.391365844659 | |
| AT1G08340_at | AT1G08340 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 30.407597164996 | |
| AT1G79620_at | AT1G79620 | Leucine-rich repeat protein kinase family protein | 31.324666764037 | |
| AT1G54790_at | AT1G54790 | GDSL-like Lipase/Acylhydrolase superfamily protein | 31.972138091138 | |
| AT3G62020_at | GLP10 | germin-like protein 10 | germin-like protein 10 | 32.236787789804 |
| AT2G41610_at | AT2G41610 | transmembrane protein | 32.637622224955 | |
| AT4G08160_at | AT4G08160 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | 33.601010469836 | |
| AT1G09610_at | GXM3 | glucuronoxylan methyltransferase 3 | glucuronoxylan 4-O-methyltransferase-like protein (DUF579) | 34.583797121948 |
| AT5G45970_at | RAC2 | RAC-like 2 | RAC-like 2 | 35.748889213455 |
| AT3G50220_at | IRX15 | IRREGULAR XYLEM 15 | IRREGULAR XYLEM protein (DUF579) | 37.619251967899 |
| AT1G27380_at | RIC2 | ROP-interactive CRIB motif-containing protein 2 | ROP-interactive CRIB motif-containing protein 2 | 40.057117105344 |
| AT5G60490_at | FLA12 | FASCICLIN-like arabinogalactan-protein 12 | FASCICLIN-like arabinogalactan-protein 12 | 40.168163089601 |
| AT2G29130_at | LAC2 | laccase 2 | laccase 2 | 40.429051872579 |
| AT1G22480_at | AT1G22480 | Cupredoxin superfamily protein | 41.576724986163 | |
| AT1G32100_at | PRR1 | pinoresinol reductase 1 | pinoresinol reductase 1 | 41.669362277843 |
| AT3G15050_at | IQD10 | IQ-domain 10 | IQ-domain 10 | 42.021700694914 |
| AT5G03260_at | LAC11 | laccase 11 | laccase 11 | 42.855238377099 |
| AT2G28760_at | UXS6 | UDP-XYL synthase 6 | UDP-XYL synthase 6 | 42.9736082498 |
| AT5G05390_at | LAC12 | laccase 12 | laccase 12 | 43.644040956891 |
| AT1G58370_at | RXF12 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | 43.823773138183 | |
| AT4G33330_at | PGSIP3 | plant glycogenin-like starch initiation protein 3 | plant glycogenin-like starch initiation protein 3 | 45.614166948527 |
| AT1G62990_at | KNAT7 | KNOTTED-like homeobox of Arabidopsis thaliana 7 | homeobox knotted-like protein | 46.640698988377 |
| AT5G01930_at | MAN6 | endo-beta-mannase 6 | Glycosyl hydrolase superfamily protein | 46.64762699096 |
| AT4G35350_at | XCP1 | xylem cysteine peptidase 1 | xylem cysteine peptidase 1 | 46.737691024537 |
| AT1G47410_at | AT1G47410 | hypothetical protein | 47.292327117028 | |
| AT1G24030_at | AT1G24030 | Protein kinase superfamily protein | 49.397054301703 | |
| AT5G67210_at | IRX15-L | IRX15-LIKE | IRREGULAR XYLEM protein (DUF579) | 49.670017603468 |
| AT2G38320_at | TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | TRICHOME BIREFRINGENCE-LIKE 34 | 49.682290065187 |
| AT1G32770_at | NAC012 | NAC domain containing protein 12 | NAC domain containing protein 12 | 50.166656417195 |
| AT1G63910_at | AtMYB103 | myb domain protein 103 | myb domain protein 103 | 50.558781363385 |
| AT1G73640_at | RABA6a | RAB GTPase homolog A6A | RAB GTPase homolog A6A | 51.579375115307 |
| AT1G70500_at | AT1G70500 | Pectin lyase-like superfamily protein | 52.347987516143 | |
| AT1G09440_at | AT1G09440 | Protein kinase superfamily protein | 52.676572781502 | |
| AT4G17220_at | MAP70-5 | microtubule-associated proteins 70-5 | microtubule-associated proteins 70-5 | 52.788806423344 |
| AT5G26330_at | AT5G26330 | Cupredoxin superfamily protein | 53.458051472849 | |
| AT3G45870_at | UMAMIT3 | Usually multiple acids move in and out Transporters 3 | nodulin MtN21 /EamA-like transporter family protein | 54.034857173606 |
| AT1G31720_at | AT1G31720 | chitin synthase, putative (DUF1218) | 54.13481835373 | |
| AT1G20850_at | XCP2 | xylem cysteine peptidase 2 | xylem cysteine peptidase 2 | 54.847214962179 |
| AT5G01190_at | LAC10 | laccase 10 | laccase 10 | 54.99270301642 |
| AT1G58070_at | AT1G58070 | WEB family protein | 55.179165257364 | |
| AT3G52900_at | AT3G52900 | RAB6-interacting golgin (DUF662) | 55.663927495234 | |
| AT4G22680_at | MYB85 | myb domain protein 85 | myb domain protein 85 | 55.744688211057 |
| AT2G27740_at | AT2G27740 | RAB6-interacting golgin (DUF662) | 55.791996571552 | |
| AT5G12870_at | MYB46 | myb domain protein 46 | myb domain protein 46 | 56.859106912244 |
| AT3G21550_at | DMP2 | DUF679 domain membrane protein 2 | transmembrane protein, putative (DUF679 domain membrane protein 2) | 57.109900605744 |
| AT5G16490_at | RIC4 | ROP-interactive CRIB motif-containing protein 4 | ROP-interactive CRIB motif-containing protein 4 | 57.336347318738 |
| AT1G29200_at | AT1G29200 | O-fucosyltransferase family protein | 59.142378620626 | |
| AT4G33810_at | AT4G33810 | Glycosyl hydrolase superfamily protein | 59.230067339032 | |
| AT5G06930_at | AT5G06930 | nucleolar-like protein | 60.55767057684 | |
| AT2G31900_at | XIF | myosin-like protein XIF | myosin-like protein XIF | 60.599634478199 |
| AT1G80170_at | AT1G80170 | Pectin lyase-like superfamily protein | 61.242355174958 | |
| AT2G31930_at | AT2G31930 | hypothetical protein | 61.339347211119 | |
| AT1G27920_at | MAP65-8 | microtubule-associated protein 65-8 | microtubule-associated protein 65-8 | 61.433765989177 |
| AT1G79420_at | AT1G79420 | C-type mannose receptor (DUF620) | 61.490179724494 | |
| AT1G43790_at | TED6 | tracheary element differentiation-related 6 | tracheary element differentiation-related 6 | 61.727315355759 |
| AT2G20650_at | AT2G20650 | RING/U-box superfamily protein | 62.554716807084 | |
| AT1G66810_at | AT1G66810 | Zinc finger C-x8-C-x5-C-x3-H type family protein | 62.977127021708 | |
| AT3G62160_at | AT3G62160 | HXXXD-type acyl-transferase family protein | 63.42012330115 | |
| AT5G59305_at | AT5G59305 | CLAVATA 3/ESR (CLE)-like protein | 63.667749907755 | |
| AT5G48740_at | AT5G48740 | Leucine-rich repeat protein kinase family protein | 63.724361586003 | |
| AT2G40120_at | AT2G40120 | Protein kinase superfamily protein | 64.164784607343 | |
| AT3G27200_at | AT3G27200 | Cupredoxin superfamily protein | 64.530781086649 | |
| AT4G23496_at | SP1L5 | SPIRAL1-like5 | SPIRAL1-like5 | 65.280984794908 |
| AT1G72220_at | AT1G72220 | RING/U-box superfamily protein | 66.105021216407 | |
| AT5G19870_at | AT5G19870 | transmembrane epididymal protein (DUF716) | 66.40906155833 | |
| AT5G46340_at | RWA1 | REDUCED WALL ACETYLATION 1 | O-acetyltransferase family protein | 66.51654456983 |
| AT1G07120_at | AT1G07120 | CHUP1-like protein | 67.236858895517 | |
| AT5G51890_at | AT5G51890 | Peroxidase superfamily protein | 68.891859741098 | |
| AT1G05310_at | AT1G05310 | Pectin lyase-like superfamily protein | 69.660274199004 | |
| AT3G42950_at | AT3G42950 | Pectin lyase-like superfamily protein | 70.230151897177 | |
| AT1G69080_at | AT1G69080 | Adenine nucleotide alpha hydrolases-like superfamily protein | 71.054386261607 | |
| AT3G55420_at | AT3G55420 | hypothetical protein | 72.845769786606 | |
| AT1G12260_at | NAC007 | NAC 007 | NAC 007 | 73.507690947666 |
| AT5G06610_at | AT5G06610 | lipase (DUF620) | 74.15357873132 | |
| AT2G28870_at | AT2G28870 | cyclin-dependent kinase inhibitor SMR1-like protein | 74.899427695099 | |
| AT3G59845_at | AT3G59845 | Zinc-binding dehydrogenase family protein | 75.038977461411 | |
| AT5G07800_at | AT5G07800 | Flavin-binding monooxygenase family protein | 75.358259409015 | |
| AT2G34790_at | MEE23 | MATERNAL EFFECT EMBRYO ARREST 23 | FAD-binding Berberine family protein | 77.795134831806 |
| AT1G71930_at | VND7 | vascular related NAC-domain protein 7 | vascular related NAC-domain protein 7 | 78.965571382449 |
| AT2G46770_at | NST1 | NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | 78.995064879159 |
| AT5G23810_at | AAP7 | amino acid permease 7 | amino acid permease 7 | 79.751008932415 |
| AT1G68200_at | AT1G68200 | Zinc finger C-x8-C-x5-C-x3-H type family protein | 81.269429155648 | |
| AT1G55760_at | AT1G55760 | BTB/POZ domain-containing protein | 84.682163227969 | |
| AT5G63580_at | FLS2 | flavonol synthase 2 | flavonol synthase 2 | 84.941072581637 |
| AT5G46115_at | AT5G46115 | hypothetical protein | 85.475320552242 | |
| AT2G37900_at | AT2G37900 | Major facilitator superfamily protein | 86.088943638153 | |
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